SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38041

Length: 1334 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene38041 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	yrdC family protein; K07566 putative translation factor	-	-	59%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	62%
Blast2go	translation factor-like	-	-	72%

Source	InterPros	Term	Type	Identity
Blast2go	Sua5/YciO/YrdC/YwlC	IPR004388	-	72%
Blast2go	YrdC-like domain	IPR006070	-	72%
Blast2go	DHBP synthase RibB-like alpha/beta domain	IPR017945	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9SVP6

Fln msg: your sequence is longer than subject: 385 - 291

Fln protein: MSSGCLIPYNIINMLLMTRLSQFIQRNEQFPERLVNFDYQWLVLYSRAFLGCREFQLSMATPLRPRVLGLSTFSAETSKSFTLLSSFHRPYNISPLKEGFPRGRNLKFSKGLSSIRPSGRKEGITVEAVVKRSPKRLKYSSPPFRKGDRVLYVEIDPSGVDAWRLEPVIELLKHGAVGIIPTDTVYAFVSDVKNPMAVERIHRIKGMDTKKPLSILCHSFRDIDTYTTGLPCGNSQGQANIFRAARQCLPGPYTFVLPASKELPKQCVKSGTSRAKHVSRKCVGVRMPNDAICQAILEKLDGPLLCSSVRTADDEWIIDPVVIADIYGASMGQEGVDFIVDGGVRVADPSTVVDMTGSEPILLRKGKGVCYDWMLPKESEETLI*

Protein Length: 386

Fln nts: CTTCT_-_ATGAGTAGCGGCTGTTTAATCCCATATAATATTATTAACATGCTTTTGaTGAcgcGTCTTTCTCAATTCATTCAgCGCAACGAGCAATTTCCAGAAAGGCTTGTGAATTTCGATTATCAATGGCTAGTACTTTATAGCCGCGCGTTCTTGGGTTGTCGTGAATTTCAGTTATCAATGGCTACTCCTTTAAGGCCGCGCGTTCTTGGGTTGTCTACATTCTCTGCAGAAACCTCCAAGTCTTTTACTCTCCTCTCTTCTTTCCACCGACCTTATAACATCTCTCCCTTAAAAGAAGGCTTTCCGAGAGGTCGGAATTTGAAATTCTCAAAAGGCTTGAGCTCAATCCGGCCATCTGGACGGAAGGAGGGAATTACAGTTGAAGCTGTTGTCAAGCGAAGTCCCAAGCGGTTAAAATACTCGTCTCCTCCATTTCGCAAGGGTGATAGAGTATTGTACGTGGAAATTGATCCATCCGGTGTAGATGCATGGAGATTAGAACCAGTGATAGAACTGCTAAAACATGGAGCAGTTGGAATCATCCCGACAGATACTGTGTATGCATTTGTCAGTGATGTCAAGAATCCGATGGCTGTGGAGCGTATTCACCGAATAAAAGGCATGGATACAAAAAAGCCTCTTAGTATATTATGCCATTCCTTCCGAGATATAGACACCTATACAACAGGCCTTCCATGTGGTAACAGCCAAGGTCAAGCCAATATCTTCCGTGCTGCTCGTCAATGCCTACCAGGACCTTACACTTTTGTATTACCAGCAAGCAAAGAATTGCCAAAACAATGTGTGAAATCTGGGACTTCTAGGGCTAAACATGTTTCTCGAAAGTGTGTTGGGGTTCGGATGCCTAATGATGCTATATGCCAAGCTATCTTAGAGAAGCTGGATGGACCCTTGCTTTGCTCAAGTGTGAGGACTGCAGATGATGAATGGATTATTGATCCTGTAGTCATTGCTGACATTTATGGTGCAAGCATGGGCCAGGAGGGTGTAGACTTTATTGTTGATGGTGGTGTTCGTGTGGCGGATCCATCCACTGTGGTCGATATGACAGGAAGTGAGCCTATACTACTACGGAAAGGAAAGGGTGTTTGCTATGACTGGATGCTCCCAAAAGAATCTGAAGAGACTTTAATCTGA___GTGATTGTAGGTTACAACCTACTAAATTATGTTGATTAGTTGAATAGCTCCTCTTCGTTGAACAACTGGGGTTTTAGTCTTTATTTTCAATATTGTAGATTACAACTCCTAAATTGTTCTAAACTCAATTAGTCAAACTTACCTTACCCTTACAATTAGAAACAAACTAAGGGT

Fln Alignment:

sp_v1.1_unigene38041___SIRPSGRKEGITVEAVVKRSPKRLKYSSPPFRKGDRVLYVEIDPSGVDAWRLEPVIELLKHGAVGIIPTDTVYAFVSDVKNPMAVERIHRIKGMDTKKPLSILCHSFRDIDTYTTGLPCGNSQGQANIFRAARQCLPGPYTFVLPASKELPKQCVK-SGTSRAKHVSRKCVGVRMPNDAICQAILEKLDGPLLCSSVR-TADDEWIIDPVVIADIYGASMGQEGVDFIVDGGVRVADPSTVVDMTGSEPILLRKGKGVCYDWMLPKESEET
A9SVP6_______________SLHPAPPRLLVTVQAVAKRSPKRLKYSSPASRKNSQVQLVQLDPSGSDVWRLDPLVELIKSGAVGIIPTDTVYAIVCDLKNRQAIDRLYRIKNMDPMKPLSILCRSFQDIDKYTLGFPRGNSHGQTNVFRAARQSLPGPYTFILPASKEMPKQCTTFGGSSAVSCAPRKSVGVRMPDDVICAELLKRLDEPLLCTSVRQRSEDEWMLDPVIIADTYGASEGREGVDFVIDGGERLAYPSTVIDMTGEKPIILRRGKGPVEEWMLMESHDST

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
739	33	66			0.999997

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain