SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38017

Length: 364 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene38017
CGTCGTGACCTTGGCTGTCACTCCATATTTCATTTCATTCCATCGTTCGTGTGTCCGAGAAGCCATGGGGATTTCAAGTCTCTCAGACGTGTCATCGAATTCAGGATTGCTCGTCACAGTGATAATCATGGAGACCAGCCTTGGCCTGGGCTCCCACCTTGCTCGTCTCATACTGATTGCAGAACTTGACAGTGAAACAAGCAGATGCTCTGGCACATTTGGTAACGTTACAGAGTGCCCTGTTTGCTTGAGTAGAATTGTTGGAGAAGTGGATCAGATTCGTAAGCTGCGTTGCTCTCATATATTTCACAAATCTTGCATTGATAGATGGATGGATTGTGACCAGCAGGCCGCCTGCCCTCTT

Ace file of the UniGene sp_v1.1_unigene38017

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 finger protein ATL3J, putative	-	-	2.0e-06	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	unknown [Picea sitchensis]	-	-	1.14082e-25	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	1.14082e-25	82%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	1.14082e-25	82%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	1.14082e-25	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A946

Fln msg: Distance to subject end: 27 aas, atg_distance in limit (1-15): atg_distance = 9, your sequence is shorter than subject: 100 - 156

Fln protein: MGISSLSDVSSNSGLLVTVIIMETSLGLGSHLARLILIAELDSETSRCSGTFGNVTECPVCLSRIVGEVDQIRKLRCSHIFHKSCIDRWMDCDQQAACPL

Protein Length: 101

Fln nts: CGTCGTGACCTTGGCTGTCACTCCATATTTCATTTCATTCCATCGTTCGTGTGTCCGAGAAGCC_-_ATGGGGATTTCAAGTCTCTCAGACGTGTCATCGAATTCAGGATTGCTCGTCACAGTGATAATCATGGAGACCAGCCTTGGCCTGGGCTCCCACCTTGCTCGTCTCATACTGATTGCAGAACTTGACAGTGAAACAAGCAGATGCTCTGGCACATTTGGTAACGTTACAGAGTGCCCTGTTTGCTTGAGTAGAATTGTTGGAGAAGTGGATCAGATTCGTAAGCTGCGTTGCTCTCATATATTTCACAAATCTTGCATTGATAGATGGATGGATTGTGACCAGCAGGCCGCCTGCCCTCTT

Fln Alignment:

sp_v1.1_unigene38017___METSLGLGSHLARLILIAELDSETSRCSGTFGNVTECPVCLSRIVGEVDQIRKLRCSHIFHKSCIDRWMDCDQQAACPL
D5A946_______________MANSLDLGSHLARLLLIAELDSRTSKSPTTFGNVTDCAVCLSRIDEGVDQICKLRCSHIFHKSCIDKWVEYGRQAACPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain