SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38007

Length: 519 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene38007
TGCGTATGCTTTGCAATGGAGACGAACAGGTTGTGGAGGCTGGTGCTAGGTCCTTGAAAATGATTTTCCAGTCAGCACTTGCTCCAAAAATGACATGCTTCAAGGTCAGAGAATGGATCTACTACTGACCCTTCTTAACAGTACCAATGAAAATGTAGCAGAATTTGCAGCAAGTGTTATTGCACGTTGCTGTGAAACCAGCATGCAACAACAGTCTTTGTTGAATGCTGGTGCTCTGGACATTCTTTTAGATCTGCTGGGAAGCTCTCTAAAGAGAAGAGAAGCTTGTTTAGATGTTTTAAGAGCTCTTGTCAAGGATAATCCTCAAATTTCTATGAAGCTGATTAATGTGAAACAGGGTGGTGCTCTAGCCACAATCATCAAATTTGTAAAAGATAAATCTCCTCGCACAAGATTGCTTGCTTGCATGTGCTTGGCAAATGTAAGCTGTGCTCGTCCTTCTAGCTATTCACAAGAATGGGAGGTGAGAACAGATATGTTACCTATTTTAGTCAAGCT

Ace file of the UniGene sp_v1.1_unigene38007 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	armadillo/beta-catenin repeat family protein	-	-	1.0e-21	33%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	58%
Blast2go	armadillo beta-catenin repeat family protein	-	-	2.49461e-35	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Armadillo	IPR000225	-	2.49461e-35	64%
Blast2go	HEAT	IPR000357	-	2.49461e-35	64%
Blast2go	Armadillo-like helical	IPR011989	-	2.49461e-35	64%
Blast2go	Armadillo-type fold	IPR016024	-	2.49461e-35	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9T9J9

Fln msg: Overlapping hits, possible frame ERROR between 104 and 86, Distance to subject end: 382 aas, your sequence is shorter than subject: 172 - 654

Fln protein: RMLCNGDEQVVEAGARSLKMIFQSALAxxxxxxxxQRMDLLLTLLNSTNENVAEFAASVIARCCETSMQQQSLLNAGALDILLDLLGSSLKRREACLDVLRALVKDNPQISMKLINVKQGGALATIIKFVKDKSPRTRLLACMCLANVSCARPSSYSQEWEVRTDMLPILVK

Protein Length: 173

Fln nts: TGCGTATGCTTTGCAATGGAGACGAACAGGTTGTGGAGGCTGGTGCTAGGTCCTTGAAAATGATTTTCCAGTCAGCACTTGCTxxxxxxxxxxxxxxxxxxxxxxxxCAGAGAATGGATCTACTACTGACCCTTCTTAACAGTACCAATGAAAATGTAGCAGAATTTGCAGCAAGTGTTATTGCACGTTGCTGTGAAACCAGCATGCAACAACAGTCTTTGTTGAATGCTGGTGCTCTGGACATTCTTTTAGATCTGCTGGGAAGCTCTCTAAAGAGAAGAGAAGCTTGTTTAGATGTTTTAAGAGCTCTTGTCAAGGATAATCCTCAAATTTCTATGAAGCTGATTAATGTGAAACAGGGTGGTGCTCTAGCCACAATCATCAAATTTGTAAAAGATAAATCTCCTCGCACAAGATTGCTTGCTTGCATGTGCTTGGCAAATGTAAGCTGTGCTCGTCCTTCTAGCTATTCACAAGAATGGGAGGTGAGAACAGATATGTTACCTATTTTAGTCAAGCT

Fln Alignment:

sp_v1.1_unigene38007___RMLCNGDEQVVEAGARSLKMIFQSALAPxxxxxxGQRMDXXXXXLNSTNENVAEFAASVIARCCETSMQQQSXXXXXXXXXXXXXXXXXLKRREACLDVLRALVKDNPQISMKLINVKQGGALATIIKFVKDKSPRTRLLACMCLANVSCARPSSYSQEWEVRTDMLPILVK
A9T9J9_______________KMLQNGDTKVAETCARALKMIFHSPLAPxxxxxxGHRMELLLQLLNHDNENVSEVAARVLARCCESKEHQQALADAGGLQSLVSLLAGSTKIREAALDALAALTKNNKQISETVIKMHNGDALISIIRLIKDKSPLSRLLACMCLANIGKACPGGYAQEGEVRATMLGILMK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain