SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37969

Length: 397 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene37969
CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAATTCTCTGAGCTCAAGTTGTTTCAGCTAGTTTAGTCTTCTCGACAAGTGGGAAGGCAGACCTTGCAATTTGTCAGAGGACATGGCGGCGGGAGCAATTTTAATGGCGGCCATTGCAGCAGCACTGTGCATGCAATGCACTTACGCTGTGCAACTCGATGTGGGAGACAGAGTAGGATGGGACCCCAGTGCTGATTTGAAAACGTGGGCTTCCACCAAGCACTTCAGCACAGGGGACAGCCTTGTTTTCAAGTACTCGCAGATTCACAGCTTGGTGGAGGTGAACAAAGCGGGTTACGATTCCTGCACGCCTGCTGCTCCCATCAAATCATACACTGACGGAACACTGCCATTC

Ace file of the UniGene sp_v1.1_unigene37969

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0653200 protein n=4 Tax=Oryza sativa RepID=Q6H8G6_ORYSJ	-	-	4.0e-12	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	blue copper protein precursor	-	-	7.84734e-14	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plastocyanin-like	IPR003245	-	7.84734e-14	67%
Blast2go	Cupredoxin	IPR008972	-	7.84734e-14	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0W5

Fln msg: Distance to subject end: 90 aas, your sequence is shorter than subject: 91 - 187

Fln protein: MAAGAILMAAIAAALCMQCTYAVQLDVGDRVGWDPSADLKTWASTKHFSTGDSLVFKYSQIHSLVEVNKAGYDSCTPAAPIKSYTDGTLPF

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAATTCTCTGAGCTCAAGTTGTTTCAGCTAGTTTAGTCTTCTCGACAAGTGGGAAGGCAGACCTTGCAATTTGTCAGAGGAC_-_ATGGCGGCGGGAGCAATTTTAATGGCGGCCATTGCAGCAGCACTGTGCATGCAATGCACTTACGCTGTGCAACTCGATGTGGGAGACAGAGTAGGATGGGACCCCAGTGCTGATTTGAAAACGTGGGCTTCCACCAAGCACTTCAGCACAGGGGACAGCCTTGTTTTCAAGTACTCGCAGATTCACAGCTTGGTGGAGGTGAACAAAGCGGGTTACGATTCCTGCACGCCTGCTGCTCCCATCAAATCATACACTGACGGAACACTGCCATTC

Fln Alignment:

sp_v1.1_unigene37969___CMQCTYAVQLDVGDRVGWDPSADLKTWASTKHFSTGDSLVFKYSQIHSLVEVNKAGYDSCTPAAPIKSYTDGT
A9P0W5_______________CMATDYTV----GDTQQWNLGVDYGTWASGKTFAVGDKLVFAYSALHSVMEVSKADYDACSTSNAIKSYNGGS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
29			80	20	0.995493
30	80			20	0.995493
33		33		66	1.0
36		33	66		1.0
37	33	66			1.0
38	33			66	1.0
44		71	14		0.984337
45		16	16	66	0.988813
48	14	14	14		0.979185
236		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain