SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37935

Length: 888 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene37935

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Germin-like protein 2 (Fragment) n=2 Tax=Picea abies RepID=Q4VSU6_PICAB	-	-	75%
FL-Next	sp=Germin-like protein subfamily 2 member 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	58%
Blast2go	rhicadhesin receptor	-	-	71%

Source	InterPros	Term	Type	Identity
Blast2go	Germin	IPR001929	-	71%
Blast2go	Cupin 1	IPR006045	-	71%
Blast2go	Cupin, RmlC-type	IPR011051	-	71%
Blast2go	RmlC-like jelly roll fold	IPR014710	-	71%
Blast2go	Germin, manganese binding site	IPR019780	-	71%

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
693	50		50		1.0
694	50			50	1.0
698		50	50		1.0
702		50	50		1.0
705		50	50		1.0
708			50	50	1.0
710			50	50	1.0
716	25			75	0.996474
761		33		66	0.997452
767			66	33	0.997452
878	33		66		0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain