SustainPineDB

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Assembly info
Unigenes
SNPs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37864

Length: 441 nt

Origin of reads: Biogeco_1 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene37864
AAAGCAGCCAAACATTGGAGAGGTGAAACCATCGTCTGTGACCTTGGCTGTCACTCACAGTGTTTCAAGATACACATCACAGATAAGGTCTGAATGGAATGGGCTCAAGGAACATGATGTTCTCTTTTTGTTATCTGTACGTCCTTTTTTAGAGCCGCTTAGTGGTGAGGAAGCATCAAAATTAAGTGTCCCAGAAAGGTTTGGGCTCCAGTATGTACGTGGATGTGAAGTCATTGAGATTCGAGATGAGGATGGCAACCTTATGAATGACTTTACAGGAAGGGTGAAGAGAGAGGAGTGGAAACCACCAAAAGGTGAGCTTCGGACTGTTGTGCTTGCCTTAGATACTGCACAGTATCAGATGGATGTCAATGCTATTGCAGAGAAGGATGCAGAAGATATATACAAGACCTTCAATGTTTTGATGAGAAGAAAACCAAA

Ace file of the UniGene sp_v1.1_unigene37864 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	EMB2765 (EMBRYO DEFECTIVE 2765); K12874 intron-binding protein aquarius	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	79%
Blast2go	embryo defective 2765	-	-	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HMW8

Fln msg: Distance to subject end: 832 aas, your sequence is shorter than subject: 146 - 1552

Fln protein: KQPNIGEVKPSSVTLAVTHSVSRYTSQIRSEWNGLKEHDVLFLLSVRPFLEPLSGEEASKLSVPERFGLQYVRGCEVIEIRDEDGNLMNDFTGRVKREEWKPPKGELRTVVLALDTAQYQMDVNAIAEKDAEDIYKTFNVLMRRKP

Protein Length: 147

Fln nts: AAAGCAGCCAAACATTGGAGAGGTGAAACCATCGTCTGTGACCTTGGCTGTCACTCACAGTGTTTCAAGATACACATCACAGATAAGGTCTGAATGGAATGGGCTCAAGGAACATGATGTTCTCTTTTTGTTATCTGTACGTCCTTTTTTAGAGCCGCTTAGTGGTGAGGAAGCATCAAAATTAAGTGTCCCAGAAAGGTTTGGGCTCCAGTATGTACGTGGATGTGAAGTCATTGAGATTCGAGATGAGGATGGCAACCTTATGAATGACTTTACAGGAAGGGTGAAGAGAGAGGAGTGGAAACCACCAAAAGGTGAGCTTCGGACTGTTGTGCTTGCCTTAGATACTGCACAGTATCAGATGGATGTCAATGCTATTGCAGAGAAGGATGCAGAAGATATATACAAGACCTTCAATGTTTTGATGAGAAGAAAACCAAA

Fln Alignment:

sp_v1.1_unigene37864___KQPNIGEVKPSSVTLAVTHSVSRYTSQIRSEWNGLKEHDVLFLLSVRPFLEPLSGEEASKLSVPERFGLQYVRGCEVIEIRDEDGNLMNDFTGRVKREEWKPPKGELRTVVLALDTAQYQMDVNAIAEKDAEDIYKTFNVLMRRKP
F6HMW8_______________KQPNIGEVKPSSVTAAVTFSISSYKARMRSEWNALKEHDVLFLLSIRPSFEPLSAEEAAKASVPQRLGLQFVRGCEVIEIRDEEGTLMNDFTGRIKRDEWKPPKGELRTVIVALDTAQYHMDVGDIAEKDAEDVYGTFNILMRRKP

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
316	71			14	0.984337
317	85		14		0.993535
319	85		14		0.993535
320	85			14	0.993535
323		14	85		0.993533
325	85		14		0.993533
331	14			85	0.993533
333			14	85	0.993533
334		14		85	0.993533
337	28			71	1.0
338		14		85	0.993533
392	40		60		1.0
393	60			40	1.0
396	40		60		1.0
399	60	40			1.0
400			60	40	1.0
402		60		40	1.0
403	60		40		1.0
404	60	40			1.0
405	40		60		1.0
408		60	40		1.0
413	60	40			1.0
414	20	60		20	0.992609

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain