SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37715

Length: 411 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene37715
CGTCGTGACCTTGGCTGTCACTCAGGTTTTCAAGTTTTTTCACATTCTTGACTCAATATTTTAGGATTATGCGTCAACTCCAATACACGGGCTCCATAACTAGTTGCACATTTGTTTGCCGGGGATTCAGTTTATGTTCATGAGTTTGTTTTAGAAATTGGGTTGATGTGCTCATTCTGTTTGCAGATTCATTAACTGAAGAATTCTTACAGAGAAATTTTGCCAGGAACAATGGAGGATTCTCAAAGATCCGGAGATCTTATATTAGTGAAAAAGAGAGAGAATGGGATAGCTTGCATAACCATAAACAGGCCCAAATCACTGAATTCATTAACAAAGAGCATGATTACTGATTTGGCAAAAGCTTTTAAATCTCTGAATGGGGATTCCCTTGTCAAGGTTATCATCATT

Ace file of the UniGene sp_v1.1_unigene37715

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ECHIA; ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A); catalytic (EC:4.2.1.17); K01692 enoyl-CoA hydratase [EC:4.2.1.17]	-	-	1.0e-10	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	unknown [Picea sitchensis]	-	-	1.39359e-23	100%

Source	ECs	Term	Type	e value	Identity
AutoFact	Enoyl-CoA hydratase.	EC:4.2.1.17	-	1.0e-10	61%

Source	KEGGs	Term	e value	Identity
AutoFact	Fatty acid elongation in mitochondria	00062	1.0e-10	61%
AutoFact	Fatty acid metabolism	00071	1.0e-10	61%
AutoFact	Valine, leucine and isoleucine degradation	00280	1.0e-10	61%
AutoFact	Geraniol degradation	00281	1.0e-10	61%
AutoFact	Lysine degradation	00310	1.0e-10	61%
AutoFact	Benzoate degradation	00362	1.0e-10	61%
AutoFact	Tryptophan metabolism	00380	1.0e-10	61%
AutoFact	beta-Alanine metabolism	00410	1.0e-10	61%
AutoFact	alpha-Linolenic acid metabolism	00592	1.0e-10	61%
AutoFact	Aminobenzoate degradation	00627	1.0e-10	61%
AutoFact	Propanoate metabolism	00640	1.0e-10	61%
AutoFact	Butanoate metabolism	00650	1.0e-10	61%
AutoFact	Limonene and pinene degradation	00903	1.0e-10	61%
AutoFact	Biosynthesis of unsaturated fatty acids	01040	1.0e-10	61%
AutoFact	Biosynthesis of plant hormones	01070	1.0e-10	61%
AutoFact	Metabolic pathways	01100	1.0e-10	61%
AutoFact	Biosynthesis of secondary metabolites	01110	1.0e-10	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Crotonase, core	IPR001753	-	1.39359e-23	100%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS56

Fln msg: Distance to subject end: 208 aas, your sequence is shorter than subject: 60 - 268

Fln protein: MEDSQRSGDLILVKKRENGIACITINRPKSLNSLTKSMITDLAKAFKSLNGDSLVKVIII

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTTCAAGTTTTTTCACATTCTTGACTCAATATTTTAGGATTATGCGTCAACTCCAATACACGGGCTCCATAACTAGTTGCACATTTGTTTGCCGGGGATTCAGTTTATGTTCATGAGTTTGTTTTAGAAATTGGGTTGATGTGCTCATTCTGTTTGCAGATTCATTAACTGAAGAATTCTTACAGAGAAATTTTGCCAGGAACA_-_ATGGAGGATTCTCAAAGATCCGGAGATCTTATATTAGTGAAAAAGAGAGAGAATGGGATAGCTTGCATAACCATAAACAGGCCCAAATCACTGAATTCATTAACAAAGAGCATGATTACTGATTTGGCAAAAGCTTTTAAATCTCTGAATGGGGATTCCCTTGTCAAGGTTATCATCATT

Fln Alignment:

sp_v1.1_unigene37715___MEDSQRSGDLILVKKRENGIACITINRPKSLNSLTKSMITDLAKAFKSLNGDSLVKVIII
A9NS56_______________MEDSQRSGDLILVKKRENGIACITINRPKSMNSLTKSMITDLAEAFKSLNGDTLVKVIII

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
173		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain