SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37708

Length: 1989 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene37708
CGTCGTGACCTTGGCTGTCACTCACATCCTCAGCCCCTGCTCCACTCTGGTCTCCGCGATGCTATGCATCGCACCTCATTACGACCTGTTACTGTGAATTGGAGCCTGAAATTGCTCCATAGCTAGTTCGATTTTCGAGGAGCTCTTTGTGCGGCTCTCCGCTCCATGTTCAGGTTGAAAAGAATAACAGATAAGAGCAATACGTCTATAGAATAATGATGAAGAACAAATCAAGGAAATCTTCCACAAGAGTTGGTAACAGTGAACAAATATGCCCCAGTTCTAATAGGAGGCGCAAAAAATCTTGTCATGATCTTGAAATGAAGGAAAGAAAAGTTGCAGAATTGATTACTTCTTCTGCTCGAAAGCATAGAATTGTTCATGTTTCTACCAGTCTTGTGTCTCCCAATCGTCAAAATAATGGAGGGAACAGTGCCACAGCTGTAAATGCCAATACAGAGTTGGGTGATGACGTTTGTCAGGATCTGAGATTAGCATTTTCTACCATTGATGACCCATGTATTGAACGAAAGAAAGCACGTCCATCTGTCATGGGGACAATATTTTCGCCTGTTTTTCATATGTCAAAGGATGCTAGCAGTGGAACTACAGCAACATGTACAGCTGATCAAGGTGAACTTATGGTCCATAAAAGTCAGCTGCTAAAGAAAAGAAATGATAACAGGGAGTCATGTGAAGAACATAAAAGGAGTGTAATAGATACTTCTCCAAATTCAGGTGACATACGAAAGGAAACTTTGATCAGACTTTCTACTGATGTGGTAGAAGCAGTGCAAGGGTCTGAGACAAATTCGGGTAATCTTCCTGATGATGATCTTGATGGTTCGCAAACAGCTTTTGATGTGGCTCAGAATGGCATTGAGTGGCCTCTTGATGATCAAAATGCATCAGATGTTCATAGGCATGGTTCAGAATCAGTGCAGGAAGGTTTGTTAAGTGCAGATGGGGCATCCTTGTTTCTAGCAATGCAGCAAACTAAATTGTTGAAGTGCAATGACGAGGCCAGCCAAGAATCCAGAGTTGCTGATGAAGATGATGAAATTGATGATTTTGATCCATATTTATTCATAAAGAATTTACCAAACCTCTCTGAAGTGGTTTCATATTTTCGGCCCATGTTGCTACCGAAACAAACACGGAGATGCCCGCCTATCACACTTGTCTTAGATTTGGATGAGACCCTTGTGCATTCAACACTGGAGCATTGTGACGATGCAGACTTCACATTCCCAGTGCATTTTAATTTGAAAGAGCATACAGTGTATGTACGATGCAGGCCTCATCTCCAGCTGTTTATGGATAGGGTTGCAGATATGTTTGAAATTATTGTATTCACAGCTAGTCAAAGCGTCTATGCGGAGCAACTCTTAAATGTACTAGATCCAAAACGGAAGCTCATTCGTCACCGTGTCTACCGTGAATCATGCGTCTTTGTAGAGGGTAATTATCTGAAGGATTTGACAGTTTTGGGTCGTGATCTTGCACAAGTTGCCATTATTGACAACTCACCACAGGCCTTTGGATTCCAAGTAGACAATGGTATTCCTATTGAGAGCTGGTTTGATGATCGTTCAGACTGCGCTTTAGTTACGTTGCTTCCTTTCCTCGAGTCATTAGTAGGACTCAATGATGTCCGTCCAATCATTGCAAAGAAATTTAATCTTCGTGAGAAAATAGCAGCAGCAGAACATCCATCAATGGGAAACAGAGGGAACCCATTCGATCGGCACTCGAGAGAATGTGTATGAGCTGCAGTTTCTATATTCATTTTAAACTAATAGCAATTTTGATTTAGAGTTCCTTCATTATCCTTTGTATTTATTCCATTTAAACTTATTAGTCAACTTGCCTTGTATATGGATATTCCATGACGTAGACTATCATTTCACTGTATGCATTTTAACAATCACTTTTAATATGAAATTTGCAGCATTCTCTTACCGGTTCCTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene37708 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NLI interacting factor (NIF) family protein	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	nli interacting factor family protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	chromosome, centromeric region	GO:0000775	Cellular Component	0.0	70%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	70%

Source	InterPros	Term	Type	Identity
Blast2go	NLI interacting factor	IPR004274	-	70%
Blast2go	Dullard phosphatase domain, eukaryotic	IPR011948	-	70%
Blast2go	HAD-like domain	IPR023214	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQY3

Fln msg:

Fln protein: MMKNKSRKSSTRVGNSEQICPSSNRRRKKSCHDLEMKERKVAELITSSARKHRIVHVSTSLVSPNRQNNGGNSATAVNANTELGDDVCQDLRLAFSTIDDPCIERKKARPSVMGTIFSPVFHMSKDASSGTTATCTADQGELMVHKSQLLKKRNDNRESCEEHKRSVIDTSPNSGDIRKETLIRLSTDVVEAVQGSETNSGNLPDDDLDGSQTAFDVAQNGIEWPLDDQNASDVHRHGSESVQEGLLSADGASLFLAMQQTKLLKCNDEASQESRVADEDDEIDDFDPYLFIKNLPNLSEVVSYFRPMLLPKQTRRCPPITLVLDLDETLVHSTLEHCDDADFTFPVHFNLKEHTVYVRCRPHLQLFMDRVADMFEIIVFTASQSVYAEQLLNVLDPKRKLIRHRVYRESCVFVEGNYLKDLTVLGRDLAQVAIIDNSPQAFGFQVDNGIPIESWFDDRSDCALVTLLPFLESLVGLNDVRPIIAKKFNLREKIAAAEHPSMGNRGNPFDRHSRECV*

Protein Length: 519

Fln nts: CGTCGTGACCTTGGCTGTCACTCACATCCTCAGCCCCTGCTCCACTCTGGTCTCCGCGATGCTATGCATCGCACCTCATTACGACCTGTTACTGTGAATTGGAGCCTGAAATTGCTCCATAGCTAGTTCGATTTTCGAGGAGCTCTTTGTGCGGCTCTCCGCTCCATGTTCAGGTTGAAAAGAATAACAGATAAGAGCAATACGTCTATAGAATA_-_ATGATGAAGAACAAATCAAGGAAATCTTCCACAAGAGTTGGTAACAGTGAACAAATATGCCCCAGTTCTAATAGGAGGCGCAAAAAATCTTGTCATGATCTTGAAATGAAGGAAAGAAAAGTTGCAGAATTGATTACTTCTTCTGCTCGAAAGCATAGAATTGTTCATGTTTCTACCAGTCTTGTGTCTCCCAATCGTCAAAATAATGGAGGGAACAGTGCCACAGCTGTAAATGCCAATACAGAGTTGGGTGATGACGTTTGTCAGGATCTGAGATTAGCATTTTCTACCATTGATGACCCATGTATTGAACGAAAGAAAGCACGTCCATCTGTCATGGGGACAATATTTTCGCCTGTTTTTCATATGTCAAAGGATGCTAGCAGTGGAACTACAGCAACATGTACAGCTGATCAAGGTGAACTTATGGTCCATAAAAGTCAGCTGCTAAAGAAAAGAAATGATAACAGGGAGTCATGTGAAGAACATAAAAGGAGTGTAATAGATACTTCTCCAAATTCAGGTGACATACGAAAGGAAACTTTGATCAGACTTTCTACTGATGTGGTAGAAGCAGTGCAAGGGTCTGAGACAAATTCGGGTAATCTTCCTGATGATGATCTTGATGGTTCGCAAACAGCTTTTGATGTGGCTCAGAATGGCATTGAGTGGCCTCTTGATGATCAAAATGCATCAGATGTTCATAGGCATGGTTCAGAATCAGTGCAGGAAGGTTTGTTAAGTGCAGATGGGGCATCCTTGTTTCTAGCAATGCAGCAAACTAAATTGTTGAAGTGCAATGACGAGGCCAGCCAAGAATCCAGAGTTGCTGATGAAGATGATGAAATTGATGATTTTGATCCATATTTATTCATAAAGAATTTACCAAACCTCTCTGAAGTGGTTTCATATTTTCGGCCCATGTTGCTACCGAAACAAACACGGAGATGCCCGCCTATCACACTTGTCTTAGATTTGGATGAGACCCTTGTGCATTCAACACTGGAGCATTGTGACGATGCAGACTTCACATTCCCAGTGCATTTTAATTTGAAAGAGCATACAGTGTATGTACGATGCAGGCCTCATCTCCAGCTGTTTATGGATAGGGTTGCAGATATGTTTGAAATTATTGTATTCACAGCTAGTCAAAGCGTCTATGCGGAGCAACTCTTAAATGTACTAGATCCAAAACGGAAGCTCATTCGTCACCGTGTCTACCGTGAATCATGCGTCTTTGTAGAGGGTAATTATCTGAAGGATTTGACAGTTTTGGGTCGTGATCTTGCACAAGTTGCCATTATTGACAACTCACCACAGGCCTTTGGATTCCAAGTAGACAATGGTATTCCTATTGAGAGCTGGTTTGATGATCGTTCAGACTGCGCTTTAGTTACGTTGCTTCCTTTCCTCGAGTCATTAGTAGGACTCAATGATGTCCGTCCAATCATTGCAAAGAAATTTAATCTTCGTGAGAAAATAGCAGCAGCAGAACATCCATCAATGGGAAACAGAGGGAACCCATTCGATCGGCACTCGAGAGAATGTGTATGA___GCTGCAGTTTCTATATTCATTTTAAACTAATAGCAATTTTGATTTAGAGTTCCTTCATTATCCTTTGTATTTATTCCATTTAAACTTATTAGTCAACTTGCCTTGTATATGGATATTCCATGACGTAGACTATCATTTCACTGTATGCATTTTAACAATCACTTTTAATATGAAATTTGCAGCATTCTCTTACCGGTTCCTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene37708___MMKNKSRKSSTRVGNSEQICPSSNRRRKKSCHDLEMKERKVAELITSSARKHRIVHVSTSLVSPNRQNNGGNSATAVNANTELGDDVCQDLRLAFSTIDDPCIERKKARPSVMGTIFSPVFHMSKDASSGTTATCTADQGELMVHKSQLLKKRNDNRESCEEHKRSVIDTSPNSGDIRKETLIRLSTDVVEAVQGSETNSGNLPDDDLDGSQTAFDVAQNGIEWPLDDQNASDVHRHGSESVQEGLLSADGASLFLAMQQTKLLKCNDEASQESRVAXXXXXXXXXDPYLFIKNLPNLSEVVSYFRPMLLPKQTRRCPPITLVLDLDETLVHSTLEHCDDADFTFPVHFNLKEHTVYVRCRPHLQLFMDRVADMFEIIVFTASQSVYAEQLLNVLDPKRKLIRHRVYRESCVFVEGNYLKDLTVLGRDLAQVAIIDNSPQAFGFQVDNGIPIESWFDDRSDCALVTLLPFLESLVGLNDVRPIIAKKFNLREKIAAAEHPSMGNRGNPFDRHSRECV
B8LQY3_______________MMKNKSRKPSTRVGNSEQICPSSNRRRKKSRHDLEMKERKVAELITSSARKHRIVHVSTSLVSPNRQNIGGNGVTAVNGNTELADDVCQDLRLAFSTIDGPCIERKKTRPSVVGTIFSPVFHMSKDATSGTSTTCTVDQGELLVHKNQAANKRNENGDSFEEHKRSVIDTPPTSGNLQKESLTRLSTDMAEAVQGSVTNSGNLPDDELVGSQTAFDATQNGIEWPLVDQNTSIDHRHGSEPVQEGLLSLDGTSLFLAMQQTKLLKCNDEASQESRVADEDDEIDDFDPYLFIKNLPDLSEVVSSFRPMLLPKQTRRCPPITLVLDLDETLVHSTLEHCDDADFTFPVHFNLKEHTVYVRCRPHLQLFMDRVADMFEIIVFTASQSVYAEQLLNVLDPKRKLIRHRVYRESCVFVEGNYLKDLTILGRDLAQVAIIDNSPQAFGFQVDNGIPIESWFDDRSDYALVTLLPFLESLVGLNDVRPIIAKKFNLREKIAAAEYPSMGNRGNPFDRHSRECV

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
1327		20		80	0.995493
1399		16		83	0.994512
1414		16		83	0.994512
1415		16	83		0.994512
1416	16	83			0.994512
1437	80		20		0.995493
1438	80			20	0.995493
1439	80		20		0.995493
1442	80		20		0.995493
1446		20	80		0.995493
1449	80		20		0.995493
1450	80		20		0.995493
1452	80	20			0.995493
1453	20			80	0.995493
1455		20		80	0.995493
1457	20			80	0.995493
1459		80	20		0.995493
1475		25	75		0.996473
1476	75	25			0.996473
1478	25		75		0.996473
1589		33		66	0.997452
1828		76		23	1.0
1975	87			12	0.992554
1982		12	87		0.992554
1988	11		88		0.924009
1991			88	11	0.924009
1994		11		88	0.92373
1997		11	88		0.92373
2001		12	50		1.0
2002	37	12		50	1.0
2003	37	12	50		1.0
2004	87	12			0.992555
2005	14		85		0.993536
2008		16	66		0.988813
2009	83	16			0.994513
2010	16	83			0.994512
2012			83	16	0.994516

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain