SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37671

Length: 1117 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene37671 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	5'->3' exoribonuclease, putative; K12619 5'-3' exoribonuclease 2 [EC:3.1.13.-]	-	-	68%
FL-Next	sp=5'-3' exoribonuclease 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	5 -3 exoribonuclease 2	-	-	78%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on ester bonds, Exoribonucleases producing 5'-phosphomonoesters.	EC:3.1.13.-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	miRNA catabolic process	GO:0010587	Biological Process	78%
Blast2go	5'-3' exoribonuclease activity	GO:0004534	Molecular Function	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FQ03

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 236 aas, your sequence is shorter than subject: 371 - 1020

Fln protein: *YAS*YQS*IDSSSDAFS*STFSLWSSAITISGGAIE*WSTDCSNYPQCRSPGYSKKAETG**TARRCCCSHC*S*RRG*AEFKREEKDISEELKLKLKNVLKEKSDLFNCDAPEEDNVRLGEPGWKERYYSEKFMVHTSEEQDKLRKDVVLKYTEGLCWVLRYYYQGVCSWQWFYPYHYAPFASDLRDLDRLQISFELGKPFKPFNQLMGVFPAASSNALPEHYRPLMTDPKSPIIDFYPTDFEIDMNGKRFAWQGVAKLPFIDEARLLAEVNKVECTLTAEEVRRNSVMHDLCFVTVSHPLAPYIFSIYEQGSHLSGQERLEVNEKIDPRASGGMNGFLCPCHGDACPTIFISPIKGMENITGFAVSDR

Protein Length: 372

Fln nts: GATAATATGCATCCTAATATCAATCCTGAATTGATAGTTCCAGTGATGCCTTTTCATAAAGCACGTTTAGCCTCTGGTCCTCAGCGATCACCATATCAGGTGGAGCAATCGAATAATGGTCAACTGACTGCTCAAACTATCCGCAGTGCAGATCACCTGGTTACTCCAAGAAAGCTGAGACGGGTTAGTGAACAGCACGGCGGTGTTGCTGCAGCCATTGTTAGAGCTGAAGAAGAGGATGAGCAGAATTTAAAAGAGAGGAAAAAGATATCTCGGAGGAATTGAAACTTAAGCTGAAGAATGTACTTAAAGAAAAATCGGATCTTTTCAATTGTGATGCGCCAGAAGAGGATAATGTTAGACTAGGAGAGCCTGGGTGGAAAGAAAGGTATTACAGTGAAAAATTTATGGTCCACACTTCAGAAGAACAAGATAAACTTCGAAAAGATGTTGTTTTGAAATATACTGAAGGACTGTGCTGGGTTTTGCGTTATTACTACCAAGGAGTATGTTCATGGCAATGGTTTTATCCATATCATTATGCTCCGTTTGCATCTGATCTGAGGGATCTGGATCGGTTGCAGATAAGCTTTGAACTAGGGAAGCCATTCAAACCATTTAATCAGCTCATGGGAGTTTTTCCAGCTGCAAGTTCAAATGCTCTTCCTGAGCATTATAGGCCCTTGATGACTGATCCAAAGTCACCTATTATTGACTTTTATCCTACTGATTTTGAGATTGACATGAATGGTAAACGTTTTGCTTGGCAGGGTGTTGCAAAATTGCCTTTCATTGATGAAGCTCGCCTACTCGCGGAGGTTAACAAGGTTGAGTGCACTTTGACAGCAGAGGAAGTGCGCAGAAATAGTGTGATGCATGACTTGTGTTTTGTGACTGTAAGTCATCCTTTGGCACCATATATTTTTTCAATTTATGAGCAAGGTAGCCATCTTTCAGGGCAGGAAAGACTTGAAGTAAATGAAAAAATTGATCCTAGAGCTAGTGGGGGTATGAATGGTTTCCTATGCCCTTGCCATGGAGACGCATGCCCAACAATCTTCATTTCACCCATTAAGGGGATGGAAAATATCACAGGCTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene37671___SDLFNCDAPEEDNVRLGEPGWKERYYSEKFMVHTSEEQDKLRKDVVLKYTEGLCWVLRYYYQGVCSWQWFYPYHYAPFASDLRDLDRLQISFELGKPFKPFNQLMGVFPAASSNALPEHYRPLMTDPKSPIIDFYPTDFEIDMNGKRFAWQGVAKLPFIDEARLLAEVNKVECTLTAEEVRRNSVMHDLCFVTVSHPLAPYIFSIYEQGSHLSGQERLEVNEKIDPRASGGMNGFLCPCHGDACPTIFISPIKGMENI
Q9FQ03_______________SDAFNSDTTEEDKVKLGQPGWRERYYEEKFSVVTPEEMERVRKDVVLKYTEGLCWVMHYYMEGVCSWQWFYPYHYAPFASDLKDLGEMDIKFELGTPFKPFNQLLGVFPAASSHALPERYRTLMTDPNSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKRRNSRMCDMLFIATSHRLAELVFSLDNHCRQLSARERVDFKVKIKPKLSDGMNGYLTPCSGETHPPVFRSPMEGMEDI

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
860		66	33		0.997453
867	33	66			0.997453
868			33	66	0.997453
870		33		66	0.997453
871	33	66			0.997452
872	33			66	0.997457
873			33	66	0.997452
874			33	66	0.997452
876	66	33			0.997452
878	66	33			0.997452
879			33	66	0.997452
880	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain