SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37656

Length: 494 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene37656
GTTTATGAATTGTTCTAGCCCTGATGTGACTGGGCATGATTTCACATATATGCCATTTGGGTATGGGAGGAGGACCTGCCCGGGCATGTGGGTTGCCCTGCGCATGCTCAAGTTCACCGTGGGGAAACTGTTACATAGTTTCGATTGGAGCATTCCAAACGGAGATGAAGGGGTGGACATGAGTGAAGCGCGTGCCGTTACGCTGTCAAAAGAGTCTCCATTGAAGGCCGCGATTAAGCCACGCCTCCCTAGACAATTCTATTGAGTGAATAGTCGCGACGCTAAACTTGTTATCAGTTTTATAATTTGGTTTACTGGTTAATCTTGGTCGTCGATTCTGTGTTTTAGGTGATATTCTCACTAACCGTTAGCACCACCATGCATGTATTTTCGTCCGTGAGTTGTCATGTTTTGGACTGTACACTTTTGTGTCAGGGAACGTACCTCATCACCTCTTTGTTTTTGATGGGAGGAAAATAAAATCTTTGCCTTCC

Ace file of the UniGene sp_v1.1_unigene37656

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	(S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative n=1 Tax=Ricinus communis RepID=B9R9F5_RICCO	-	-	4.0e-15	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	flavonoid 3-monooxygenase	-	-	3.69847e-32	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome P450	IPR001128	-	3.69847e-32	65%
Blast2go	Cytochrome P450, conserved site	IPR017972	-	3.69847e-32	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLA5

Fln msg: your sequence is shorter than subject: 88 - 528

Fln protein: FMNCSSPDVTGHDFTYMPFGYGRRTCPGMWVALRMLKFTVGKLLHSFDWSIPNGDEGVDMSEARAVTLSKESPLKAAIKPRLPRQFY*

Protein Length: 89

Fln nts: GTTTATGAATTGTTCTAGCCCTGATGTGACTGGGCATGATTTCACATATATGCCATTTGGGTATGGGAGGAGGACCTGCCCGGGCATGTGGGTTGCCCTGCGCATGCTCAAGTTCACCGTGGGGAAACTGTTACATAGTTTCGATTGGAGCATTCCAAACGGAGATGAAGGGGTGGACATGAGTGAAGCGCGTGCCGTTACGCTGTCAAAAGAGTCTCCATTGAAGGCCGCGATTAAGCCACGCCTCCCTAGACAATTCTATTGA___GTGAATAGTCGCGACGCTAAACTTGTTATCAGTTTTATAATTTGGTTTACTGGTTAATCTTGGTCGTCGATTCTGTGTTTTAGGTGATATTCTCACTAACCGTTAGCACCACCATGCATGTATTTTCGTCCGTGAGTTGTCATGTTTTGGACTGTACACTTTTGTGTCAGGGAACGTACCTCATCACCTCTTTGTTTTTGATGGGAGGAAAATAAAATCTTTGCCTTCC

Fln Alignment:

sp_v1.1_unigene37656___FMNCSSPDVTGHDFTYMPFGYGRRTCPGMWVALRMLKFTVGKLLHSFDWSIPNGDEGVDMSEARAVTLSKESPLKAAIKPRLPRQFY
B8LLA5_______________FLNSSSPDLNGHDFKYIPFGYGRRACPGMWVALRMLLLTVGRLLQSFDWSIPDGIEGVDMNEGRALTLHKAVPLEAAIKPRLPQHLY

SNPs (tot: 3)

Position	A %	C %	T %	Probability
341	14	85		0.993533
348		25	75	0.996477
372	25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain