SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37650

Length: 455 nt

UniGene Fasta

>sp_v1.1_unigene37650
ATGGGGACTTCTCGCAATAGCTGCTGCGGATAATTTACAGCATTAATGGCGCTTTCTATTGATATCGACGAAATTCGCAGAGTGTATGAAACGATCGATGAAAATTGCGACGGCAGGCTGACTGTAACTGAGATGTATCGCTCCCTGAGTCGGATCGGAATCGATATTTCAGAAGAAGACTTAAAATGTGTGGTTGCACAAATGTCTCAGACCGAAGAGGGTAGCCTAACATTTGATGAATTTGTTGGGCTCTGTCAGTTTCTTCTGGACGATACGAGATCAGAAGATGAGTTGGGCAATGGCGATGAGTGTGCGGATTTGATGGAGGCTTTCAAGGTCTATGATATCAATAATGACGGCTTCATATCCTCCACTGAGCTTCAACGGGTGCTCTGTAATCTGGGATTCATGGAGGGGGAAAATCTAGAAAATTGCCAGAAGATGATATGTACATA

Ace file of the UniGene sp_v1.1_unigene37650

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin, putative n=1 Tax=Ricinus communis RepID=B9SMP8_RICCO	-	-	5.0e-18	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	protein	-	-	0.0	61%

Source	InterPros	Term	Type	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	61%
Blast2go	EF-hand-like domain	IPR011992	-	61%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	61%
Blast2go	EF-hand	IPR018248	-	61%
Blast2go	EF-HAND 2	IPR018249	-	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM84

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 136 - 177

Fln protein: MALSIDIDEIRRVYETIDENCDGRLTVTEMYRSLSRIGIDISEEDLKCVVAQMSQTEEGSLTFDEFVGLCQFLLDDTRSEDELGNGDECADLMEAFKVYDINNDGFISSTELQRVLCNLGFMEGENLENCQKMICT

Protein Length: 137

Fln nts: ATGGGGACTTCTCGCAATAGCTGCTGCGGATAATTTACAGCATTA_-_ATGGCGCTTTCTATTGATATCGACGAAATTCGCAGAGTGTATGAAACGATCGATGAAAATTGCGACGGCAGGCTGACTGTAACTGAGATGTATCGCTCCCTGAGTCGGATCGGAATCGATATTTCAGAAGAAGACTTAAAATGTGTGGTTGCACAAATGTCTCAGACCGAAGAGGGTAGCCTAACATTTGATGAATTTGTTGGGCTCTGTCAGTTTCTTCTGGACGATACGAGATCAGAAGATGAGTTGGGCAATGGCGATGAGTGTGCGGATTTGATGGAGGCTTTCAAGGTCTATGATATCAATAATGACGGCTTCATATCCTCCACTGAGCTTCAACGGGTGCTCTGTAATCTGGGATTCATGGAGGGGGAAAATCTAGAAAATTGCCAGAAGATGATATGTACATA

Fln Alignment:

sp_v1.1_unigene37650___MALSIDIDEIRRVYETIDENCDGRLTVTEMYRSLSRIGIDISEEDLKCVVAQMSQTEEGSLTFDEFVGLCQFLLDDTRSEDELGNGDE-CADLMEAFKVYDINNDGFISSTELQRVLCNLGFMEGENLENCQKMIC
A9NM84_______________MALSIDIDELRRLYETINENGDGRLTVNEMNRSLNRIGIDISEEDLKYLVIPMSQSEDGSLTFDEFVGLCQSILDDTRSEDELRNGEEGCEDLMEAFKVYDMNNDGFISSTELQRVLCNLGFVEGEELDNCQKMIC

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
104	66	33			0.997476
128	33	66			0.997464
303		66	33		0.997464
308	66		33		0.997458
311			66	33	0.997467
363		66		33	0.997467
373	66		33		0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain