SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37588

Length: 1183 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene37588

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger (C3HC4-type RING finger) family protein	-	-	5.0e-39	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	zinc finger (c3hc4-type ring finger) family protein	-	-	4.16968e-40	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-CH-type	IPR011016	-	4.16968e-40	64%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	4.16968e-40	64%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	4.16968e-40	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQD2

Fln msg: Overlapping hits, possible frame ERROR between 559 and 553, your sequence is shorter than subject: 256 - 279

Fln protein: MNEHCSFPIHEINVLSSSAAANAGAAVMDCAGPVYDRPDDHSITIRAASDDPEEKEIWWNSASPQGLAECRICQEEEEIFNLEVPCACSGSVKFAHRKCVQRWCNxxxxTTCEICHQTYKSGYTALPRPTSVNPRYNDNEDEVGDASILMGQNFVDVDYDDFSEIHSNTAACCRSAAIILLVLLLLRHALSIAAATIDEDSSVFFILFLLRAAGFLLPCYIMARAMNILQLRRQRHQVRSVRFSMAAIPRTNATL*

Protein Length: 257

Fln nts: ATGGGGCAGAGTACATGGGGCTCCTTCCCTACGCCCCTCAGCTCGCTTTTCTAATAAAATCAGCGGTCTCACAGGGGGGGAAGTATATTTGAGGCAGGTGAAATTTTGGGGATCGAGGCAGACTATTGACAGTCTTCTGAAAAAAACTGCTCTGATGGCAGTCATGACTTTAGTCTAGTCTTGTTTGAACTTTGATTCTCTGCAAAACATAAATTTGTTTCGTAGGAAGGACGCC_-_ATGAACGAGCACTGCTCCTTCCCAATACATGAAATCAATGTCCTTTCTTCTTCTGCTGCTGCTAATGCAGGAGCTGCTGTGATGGATTGTGCTGGTCCTGTATATGATCGGCCAGATGATCACTCCATAACCATTAGAGCAGCTTCAGATGATCCTGAAGAGAAAGAGATATGGTGGAACTCAGCATCCCCACAAGGCCTTGCTGAGTGCAGAATATGCCAAGAGGAGGAAGAAATCTTCAACCTTGAAGTCCCCTGTGCTTGCTCTGGAAGTGTCAAGTTCGCCCATCGCAAGTGCGTTCAACGTTGGTGCAACxxxxxxxxxxxxACCACCTGTGAAATTTGCCATCAGACTTACAAGAGTGGATACACAGCACTGCCAAGGCCTACTTCAGTCAATCCAAGATATAACGATAATGAGGATGAGGTGGGAGATGCAAGCATATTAATGGGCCAAAATTTTGTGGATGTTGATTATGATGACTTTTCGGAAATTCATTCCAACACAGCTGCCTGCTGCCGTTCAGCAGCCATCATTTTATTGGTGCTGTTACTTCTTCGTCATGCTCTGTCCATCGCTGCAGCTACTATAGATGAGGATTCTTCAGTTTTCTTCATCCTTTTCCTGTTGAGAGCTGCTGGGTTTCTTCTTCCCTGCTATATAATGGCTCGAGCAATGAATATTCTTCAGCTTAGACGCCAGCGCCATCAGGTCAGAAGTGTGAGATTCTCCATGGCTGCTATTCCAAGGACAAATGCAACTCTGTAA___CAAAACTCCCTGCAGCTTTGCTTTACCCATTAAGCATCATCATTTATTCATTATTGTTGTACCCTGCACTGTAAAAGATTTTACTTGAGAATGAATGGAGGAGTTTTACATGAAAAAGGATGGAGAGATTGGTCAAAATAATGTTGAAAAAGCAATGAAAGTAGATTACTGCAGATTATGA

Fln Alignment:

sp_v1.1_unigene37588___ECRICQEEEEIFNLEVPCACSGSVKFAHRKCVQRWCNExxDTTCEICHQTYKSGYTALPRPTS------VNPRYNDNEDEVGDASILMG---QNFVDVDYDDFSEIHSNTAACCRSXXXXXXXXXXXXXXXXXXXXTIDEDSSVFFILFLLRAAGFLLPCYIMARAMNILQLRRQRHQ
B8LQD2_______________ECRICQEEDEDRSMEIPCACSGSMKYAHRKCVQRWCNExxDTTCEICQQTYKPGYTAPLRPLSGGIAIDISGNWGSQLDLNDPRLLAMAAAERHFLEAEYDEYTAANSSGSACCRSAALIFMALLLLRHALAIASAGGDEDVSTFFTL-LLRTAGFLLPCYIMARAMNILQHRRQRQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain