SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37545

Length: 540 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene37545
AAGGAAAACTGGAGGTAATTGTAAAAGAGACAAGGATTTTGATGATAATAAAAGTTTTCAGCATCATGAAAAACACAAGCTGGAGATTCGTATGAATAGATCAACATTTGATCCTGAAGAGTTTGCCTTGTACAAGAAGTATCAAATAAGGGTGCATAACGATAGACCGGAGGAAGTGCGGGAGAGTTCTTACAAAAGATTTCTTGTGGAAACTCCACTTATTTTTGTTCCACYAGGGAATGACAACTCTGCTCCTCCTTGTGGCTTTGGCTCATTTCACCAGCAGTACTTGATTGATGGTAGATTGGTTGCTGTTGGTGTGGTTGATATATTACCTAGATGTCTTTCAAGTAAGTACATGTTTTGGGATCCCGATTTGGCGTTTTTATCACTTGGGAAGTATTCAGCTCTAGAGGAAATAAAATGGGTGCAAGCTGCACAAAAGCATTGCCCTACTCTTCAGTACTACTATCTTGGTTACTACATTCACTCTTGTCCGAAAATGAGATACAAGGCAGCATATAATCCTTCGGAACTTCT

Ace file of the UniGene sp_v1.1_unigene37545

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Arginyl-tRNA--protein transferase 1 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T4R5_VITVI	-	-	77%
FL-Next	sp=Arginyl-tRNA--protein transferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	70%
Blast2go	arginine-trna-protein transferase 1 homolog	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arginyltransferase.	EC:2.3.2.8	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	leaf senescence	GO:0010150	Biological Process	83%
Blast2go	regulation of lipid catabolic process	GO:0050994	Biological Process	83%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	83%
Blast2go	regulation of seed germination	GO:0010029	Biological Process	83%
Blast2go	xylem development	GO:0010089	Biological Process	83%
Blast2go	arginyltransferase activity	GO:0004057	Molecular Function	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Arginine-tRNA-protein transferase, C-terminal	IPR007472	-	0.0	83%
Blast2go	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZT48

Fln msg: Distance to subject end: 163 aas, your sequence is shorter than subject: 179 - 632

Fln protein: RKTGGNCKRDKDFDDNKSFQHHEKHKLEIRMNRSTFDPEEFALYKKYQIRVHNDRPEEVRESSYKRFLVETPLIFVPLGNDNSAPPCGFGSFHQQYLIDGRLVAVGVVDILPRCLSSKYMFWDPDLAFLSLGKYSALEEIKWVQAAQKHCPTLQYYYLGYYIHSCPKMRYKAAYNPSEL

Protein Length: 180

Fln nts: AAGGAAAACTGGAGGTAATTGTAAAAGAGACAAGGATTTTGATGATAATAAAAGTTTTCAGCATCATGAAAAACACAAGCTGGAGATTCGTATGAATAGATCAACATTTGATCCTGAAGAGTTTGCCTTGTACAAGAAGTATCAAATAAGGGTGCATAACGATAGACCGGAGGAAGTGCGGGAGAGTTCTTACAAAAGATTTCTTGTGGAAACTCCACTTATTTTTGTTCCACtAGGGAATGACAACTCTGCTCCTCCTTGTGGCTTTGGCTCATTTCACCAGCAGTACTTGATTGATGGTAGATTGGTTGCTGTTGGTGTGGTTGATATATTACCTAGATGTCTTTCAAGTAAGTACATGTTTTGGGATCCCGATTTGGCGTTTTTATCACTTGGGAAGTATTCAGCTCTAGAGGAAATAAAATGGGTGCAAGCTGCACAAAAGCATTGCCCTACTCTTCAGTACTACTATCTTGGTTACTACATTCACTCTTGTCCGAAAATGAGATACAAGGCAGCATATAATCCTTCGGAACTTCT

Fln Alignment:

sp_v1.1_unigene37545___KSFQHHE--KHKLEIRMNRSTFDPEEFALYKKYQIRVHNDRPEEVRESSYKRFLVETPLIFVPLGNDNSAPPCGFGSFHQQYLIDGRLVAVGVVDILPRCLSSKYMFWDPDLAFLSLGKYSALEEIKWVQAAQKHCPTLQYYYLGYYIHSCPKMRYKAAYNPSEL
Q9ZT48_______________KDSENHQARKRKLEIHLKRSSFDPEEHELYKRYQLKVHNDKPGHVVESSYRRFLVDSPLIDVQPSGDEKVPPCGFGSFHQQYRIDGRLIAVGVVDILPKCLSSVYLFWDPDYAFLSLGKYSAIQEINWVIENQARCPSLQYYYLGYYIHSCSKMRYKAAYRPSEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain