SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37517

Length: 909 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene37517 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH	-	-	1.00053e-42	46%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	46%
Blast2go	retrotransposon unclassified	-	-	0.0	64%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: A5ASY8

Fln msg: Overlapping hits, possible frame ERROR between 108 and 87, query STOP codon is far from subject stop. Distance to subject end: 29 aas, your sequence is shorter than subject: 220 - 1384

Fln protein: RRDLGCHSNYHATTKMTPYEVVYGQLPPxxxxxxxxxSKVQAVDQLLQNRTTMLAHLRENLHQAQNRMKQQVDQHRSECQFQEGDQVFLRLQPYKQTSLKDKGCQKLSPKFYGPYQVLQRIGEVAYKLALPPTTKIHPVFHVSCLKKVIGNNCRVQTSLPELDEEGSIWLQPEQVLDTRDKHLRGRMIKEVLVKWKDTSPEDATWEPTTILQQFPQLQP*

Protein Length: 221

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTATCATGCCACCACCAAAATGACTCCATATGAAGTAGTTTATGGTCAACTTCCTCCTxxxxxxxxxxxxxxxxxxxxxxxxxxxTCAAAAGTACAAGCAGTGGATCAACTCCTACAAAACCGCACAACCATGCTTGCCCATCTTAGAGAGAATCTTCATCAAGCTCAAAACCGCATGAAGCAACAGGTAGATCAACATCGCTCAGAGTGCCAATTTCAAGAAGGGGATCAGGTATTTTTGAGGCTGCAACCATATAAGCAAACATCACTCAAAGACAAGGGTTGTCAGAAGCTATCTCCAAAATTCTACGGACCATACCAAGTACTTCAGCGCATTGGAGAAGTGGCTTACAAGCTGGCTTTGCCACCTACTACAAAAATCCATCCAGTTTTCCATGTATCGTGCCTCAAGAAAGTGATTGGGAACAATTGCCGAGTTCAAACCAGTCTACCTGAATTGGACGAAGAAGGGTCAATCTGGCTTCAACCGGAACAGGTTCTAGACACACGAGACAAGCACCTGCGCGGCCGCATGATTAAGGAAGTCCTCGTCAAATGGAAAGACACCTCTCCGGAAGATGCAACTTGGGAACCAACCACTATTCTTCAGCAGTTTCCGCAGCTTCAGCCTTGAGGACAAGGCTATTCTTATGGGGGAGGGCATGTTAGGGTCCCACCCTAACCCCCGTATTTATGCAGTAGGATCAAGTCATAGTTATAGTTAAGTAAAGAGTCAATAAAGCCCATATTAATAATTGTAAGTGGTTAACCCTCATTTAATGATGGGACCATAGTTAGTTGCAAATGGGCCATGGTATTAGATAGATGGTATTAATAAGAACCATGGTATTGCATGTATGAATCATATATAAAGGATAGAGACT

Fln Alignment:

sp_v1.1_unigene37517___HSNYHATTKMTPYEVVYGQLPPSPxxxxxxGCSKVQAVDQLLQNRTTMLAHLRENLHQAQNRMKQQVDQHRSECQFQEGDQVFLRLQPYKQTSLKDKGCQKLSPKFYGPYQVLQRIGEVAYKLALPPTTKIHPVFHVSCLKKVIGNNCRVQTSLPELDEEGSIWLQPEQVLDTRDKHLRGRMIKEVLVKWKDTSPEDATWEPT
A5ASY8_______________NTTYHASTGMTPFQALYGRLPPTIxxxxxxGTTPIHAVDQNLASRNAILRQLKTNLHAATNRMKQVADSKRRNIEYQVGDMVFLKLQPYRQQSVFCXASQKLASRFYGPYQIEQRIGKVAYKLNLPEGSKIHPIFHVSLLKKKLGEPNNTTVELPLTDDEGEIVLEPEGILDTRWVKKGSRIFEESLVKWKRLPLDDATWEDT

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
512		50		50	1.0
513	75			25	0.996473
516	50	25	25		0.995534
527		75	25		0.996473
528	25	50		25	0.995533
530	50		50		1.0
537	75		25		0.996473
547		80		20	0.995493
553		60		40	1.0
567	50		50		1.0
568		20		80	0.995493
570		20		80	0.995493
572	50		50		1.0
591			20	80	0.995493
593	20		80		0.995493
594		60		40	1.0
597	20	60		20	0.99255
599			60	40	1.0
603	50	25		25	0.995533
615	40		60		1.0
622	50			50	1.0
625		20		80	0.995493
626	20			80	0.995493
627	20			80	0.995493
629		80	20		0.995493
631		20		80	0.995493
634			20	80	0.995493
636		20		80	0.995493
644	25		75		0.996473
654			33	66	0.997452
663		66		33	0.997476
687	33		66		0.997452
696	66		33		0.997452
699			33	66	0.997452
715		66		33	0.997452
717	33		66		0.997453
752		66		33	0.997452
759	33		66		0.997452
764		33		66	0.997452
765		33	66		0.997452
768	33		66		0.997452
770			33	66	0.997453
771		33		66	0.997476
797	33	66			0.997452
798		33		66	0.997452
801			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain