SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37512

Length: 458 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene37512
CGTCGTGACCTTGGCTGTCACTCACTTGCTGCAGTTAGAGTTTTTGTTCCCAAAGTTTTAATGCTATAGAATCTGGTGTGCAAGGTTCACCAAGTAGAGAAGAAGGTGAAGTCCATGATACTGAATTGGATCCGGATACAAGAAGGCGGCTTCTCATATTACAGCATGGCCAAGACACTGGGAAACATAATTCTGTTGATCCTCCTTTCCCAGTTAGGCCATTGAAAATTACATTGCCCCCAAATCAAGCTCCTGGTGGATGGCTTGGACCAGAGGAGGAGATGAGTCCTAGGCAAATTACAAGGCCATCTCAAGGACCTCCTCTTCAACCTGATTCTCTCTCTTTTGATAAGCAACGGCTCCCGCAACCTTCATATTATCATGGTGCAGAGAATTCTCTTGCCAATGATAGGTGTTTGATGAATCTAAAGACGGTTACCTGAAGATGGATATTTGGA

Ace file of the UniGene sp_v1.1_unigene37512

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	double-stranded RNA binding protein, putative	-	-	9.0e-23	47%
FL-Next	sp=RNA polymerase II C-terminal domain phosphatase-like 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	49%
Blast2go	protein	-	-	2.46169e-28	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoserine phosphatase.	EC:3.1.3.3	-	2.46169e-28	66%

Source	KEGGs	Term	e value	Identity
Blast2go	Glycine, serine and threonine metabolism	00260	2.46169e-28	66%
Blast2go	Methane metabolism	00680	2.46169e-28	66%
Blast2go	Metabolic pathways	01100	2.46169e-28	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abiotic stimulus	GO:0009628	Biological Process	2.46169e-28	66%
Blast2go	response to wounding	GO:0009611	Biological Process	2.46169e-28	66%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	2.46169e-28	66%
Blast2go		GO:0016481	Biological Process	2.46169e-28	66%
Blast2go	protein binding	GO:0005515	Molecular Function	2.46169e-28	66%
Blast2go	nucleotide phosphatase activity	GO:0019204	Molecular Function	2.46169e-28	66%
Blast2go	phosphoserine phosphatase activity	GO:0004647	Molecular Function	2.46169e-28	66%
Blast2go	nucleus	GO:0005634	Cellular Component	2.46169e-28	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5YDB6

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 287 aas, your sequence is shorter than subject: 147 - 967

Fln protein: S*PWLSLTCCS*SFCSQSFNAIESGVQGSPSREEGEVHDTELDPDTRRRLLILQHGQDTGKHNSVDPPFPVRPLKITLPPNQAPGGWLGPEEEMSPRQITRPSQGPPLQPDSLSFDKQRLPQPSYYHGAENSLANDRCLMNLKTVT*

Protein Length: 148

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTGCTGCAGTTAGAGTTTTTGTTCCCAAAGTTTTAATGCTATAGAATCTGGTGTGCAAGGTTCACCAAGTAGAGAAGAAGGTGAAGTCCATGATACTGAATTGGATCCGGATACAAGAAGGCGGCTTCTCATATTACAGCATGGCCAAGACACTGGGAAACATAATTCTGTTGATCCTCCTTTCCCAGTTAGGCCATTGAAAATTACATTGCCCCCAAATCAAGCTCCTGGTGGATGGCTTGGACCAGAGGAGGAGATGAGTCCTAGGCAAATTACAAGGCCATCTCAAGGACCTCCTCTTCAACCTGATTCTCTCTCTTTTGATAAGCAACGGCTCCCGCAACCTTCATATTATCATGGTGCAGAGAATTCTCTTGCCAATGATAGGTGTTTGATGAATCTAAAGACGGTTACCTGAAGATGGATATTTGGA

Fln Alignment:

sp_v1.1_unigene37512___ESGVQGSPSREEGEVHDTELDPDTRRRLLILQHGQDTGKHNSVDPPFPVRPLKITLPPN--QAPGGWLGPEEEMSPRQITRP-SQGPPLQPDSLSFDKQRLPQPSYYHGAENSLANDRCL
Q5YDB6_______________EPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPAPSEPSFPQRP-PVQAPPSHVQSRNGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEKHRPRHPSFFSKIDNSTQSDRML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain