SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37496

Length: 301 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene37496
CGTCGTGACCTTGGCTGTCACTCATATATCGCCTCTTGGCATCAGGAACCATGGAAGAAGAGAAGTATCAGAGGACTGTTTGGAAAGACTGTTTATCAAAGTTGATTTTTGTTTCTCCAGATGATGGAGATCCAAGTACTAGAGATAACAAACAGACCATACACTGTGAAGATAAAATCCTTGACAAGCTTGTTGAACTGGACAGAGAAACAAATGCATTCAATACCATTTTTGAACACAGTGAATTGAAAGGGAGGAAGGACACGAGGTCAGATTACTTTAAGGGTTACTATAACGTAAA

Ace file of the UniGene sp_v1.1_unigene37496

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HHV5_POPTR	-	-	1.0e-06	40%
FL-Next	tr=Putative uncharacterized protein; subsp. trichocarpa).	-	-	0.0	40%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9HSJ0

Fln msg: STOP codon was not found. Distance to subject end: 15 aas,

Fln protein: MEEEKYQRTVWKDCLSKLIFVSPDDGDPSTRDNKQTIHCEDKILDKLVELDRETNAFNTIFEHSELKGRKDTRSDYFKGYYNV

Protein Length: 84

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATATCGCCTCTTGGCATCAGGAACC_-_ATGGAAGAAGAGAAGTATCAGAGGACTGTTTGGAAAGACTGTTTATCAAAGTTGATTTTTGTTTCTCCAGATGATGGAGATCCAAGTACTAGAGATAACAAACAGACCATACACTGTGAAGATAAAATCCTTGACAAGCTTGTTGAACTGGACAGAGAAACAAATGCATTCAATACCATTTTTGAACACAGTGAATTGAAAGGGAGGAAGGACACGAGGTCAGATTACTTTAAGGGTTACTATAACGTAAA

Fln Alignment:

sp_v1.1_unigene37496___IYRLLASGTMEEEKYQRTVWKDCLSKLIFVSPDDGDPSTRDNKQTIHCEDKILDKLVELDRETNAFNTIFEHSE
B9HSJ0_______________VYQLLATGTVEEDKYHRTAWKNWVSRMIFSEESVEDPS---RWQAEKIEDDVLREIVEEDR-VKSFHMIMKNEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain