SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37479

Length: 497 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene37479
TTTCGATAAGAACGTTTGACGGAGACACAGACCAAAGGAAAGCATGGTTCAACCCTTCAACAGTCAGACTTGAAAATCTAACCCCAACGCTCGGAGACGGTTCCCTCTTTCCTGAAGAGGCAATTGAACCCTGCATCCAAATAACCGAAGAAGAGTGTGTGGACATCACCTGGGAAGTTGGTGATGTTCTGGTGCTGGACAATCGCTTTGTACAGCATGCCAGAAGGCCTTCAACCCCACCTAGAAGGGTACTCGTAGCCTTCTGCAAGTAGAATGGGTGGGTATTAGCTCGACAGCCAAGCATTTGCTGGACTATTATTTCCATTACTAAGCATTTTGCTGGTGGTAGTATACTAAGCATTGTTGCTGGTGGTAATTAATCACAGAGCTTAATCTCTTTCCGCCTTTCTTGGAAATATCCAAATAGATATCTCAAGGTTTATTTCTGCAATAGCTGCAATTTGATTAAAAACTAAGGTCCTTTAACAATGGTTGCC

Ace file of the UniGene sp_v1.1_unigene37479 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	electron carrier/ oxidoreductase	-	-	3.0e-13	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	protein	-	-	3.21766e-36	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0D6

Fln msg: your sequence is shorter than subject: 90 - 319

Fln protein: SIRTFDGDTDQRKAWFNPSTVRLENLTPTLGDGSLFPEEAIEPCIQITEEECVDITWEVGDVLVLDNRFVQHARRPSTPPRRVLVAFCK*

Protein Length: 91

Fln nts: TTTCGATAAGAACGTTTGACGGAGACACAGACCAAAGGAAAGCATGGTTCAACCCTTCAACAGTCAGACTTGAAAATCTAACCCCAACGCTCGGAGACGGTTCCCTCTTTCCTGAAGAGGCAATTGAACCCTGCATCCAAATAACCGAAGAAGAGTGTGTGGACATCACCTGGGAAGTTGGTGATGTTCTGGTGCTGGACAATCGCTTTGTACAGCATGCCAGAAGGCCTTCAACCCCACCTAGAAGGGTACTCGTAGCCTTCTGCAAGTAG___AATGGGTGGGTATTAGCTCGACAGCCAAGCATTTGCTGGACTATTATTTCCATTACTAAGCATTTTGCTGGTGGTAGTATACTAAGCATTGTTGCTGGTGGTAATTAATCACAGAGCTTAATCTCTTTCCGCCTTTCTTGGAAATATCCAAATAGATATCTCAAGGTTTATTTCTGCAATAGCTGCAATTTGATTAAAAACTAAGGTCCTTTAACAATGGTTGCC

Fln Alignment:

sp_v1.1_unigene37479___SIRTFDGDTDQRKAWFNPSTVRLENLTPTLGDGSLFPEEAIEPCIQITEEECVDITWEVGDVLVLDNRFVQHARRPSTPPRRVLVAFCK
A9P0D6_______________SIRTVDGDTDKRKAWFNPSAAR--QTIPVLGDGSLFPEEAIEPYIRITEEECVDVTWEVGDVLVLDNRFVQHARRPSTPPRRLLAAFCK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
300		88		11	0.923564
303			11	88	0.923564
307	11	88			0.923564
314	11	88			0.923564
317	88		11		0.923564
318	88			11	0.923564
321		11		88	0.923564
322		88	11		0.991528
325		88	11		0.991528
416	16		83		0.994512
473			83	16	0.994512
487	20		80		0.9955

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain