SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37430

Length: 385 nt

Origin of reads: Biogeco_2 Uagpf

UniGene Fasta

>sp_v1.1_unigene37430
CGTCGTGACCTTGGCTGTCACTCAGGATCAAATTGGGTTACTGTAAGAAAAGGATTGTGCTGTGTCTGCTGTGACAGTCACATTGATTCTCTACTGTACAGGTGTGGTCACATGTGTACTTGTCTAAAATGTGCAAATGAATTGCTTCACAATAGTGGAAAATGTCCGATGTGTCGAGCTCCAATTGTGGAGGTTGTTCGGGCCTATTGTGTGATGTGAATATGAACGTCTTTCTGAAAGAGACTTATACTTGTGTTCCTACGAAGTGGCATTATCTTACTCTGCTGATCAAAGGGTCTATGCAGAGAATTCATGACATAGTATACAAAAAATCTATGTCATGAATTTTTGTATCAGTGTTGTCATGATTGGTGCAGGTCAACAT

Ace file of the UniGene sp_v1.1_unigene37430

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein binding / zinc ion binding	-	-	7.0e-26	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	protein binding protein	-	-	3.01124e-26	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	3.01124e-26	85%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	3.01124e-26	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW00

Fln msg: your sequence is shorter than subject: 73 - 451

Fln protein: RRDLGCHSGSNWVTVRKGLCCVCCDSHIDSLLYRCGHMCTCLKCANELLHNSGKCPMCRAPIVEVVRAYCVM*

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGATCAAATTGGGTTACTGTAAGAAAAGGATTGTGCTGTGTCTGCTGTGACAGTCACATTGATTCTCTACTGTACAGGTGTGGTCACATGTGTACTTGTCTAAAATGTGCAAATGAATTGCTTCACAATAGTGGAAAATGTCCGATGTGTCGAGCTCCAATTGTGGAGGTTGTTCGGGCCTATTGTGTGATGTGA___ATATGAACGTCTTTCTGAAAGAGACTTATACTTGTGTTCCTACGAAGTGGCATTATCTTACTCTGCTGATCAAAGGGTCTATGCAGAGAATTCATGACATAGTATACAAAAAATCTATGTCATGAATTTTTGTATCAGTGTTGTCATGATTGGTGCAGGTCAACAT

Fln Alignment:

sp_v1.1_unigene37430___KGLCCVCCDSHIDSLLYRCGHMCTCLKCANELLHNSGKCPMCRAPIVEVVRAY
A9NW00_______________ENLCTICFEEQKNSFFQPCGHCATCYNCGLRIKEMSPECPICRQPIQEIGKIY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain