SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37417

Length: 1819 nt

Origin of reads: Biogeco_1 Biogeco_2

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene37417

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chaperone protein dnaJ 8, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RGM8_RICCO	-	-	3.0e-28	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	protein	-	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stress	GO:0006950	Biological Process	0.0	66%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	0.0	66%
Blast2go	Heat shock protein DnaJ	IPR003095	-	0.0	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9N7

Fln msg:

Fln protein: MAAKVGRLVGADNNLFLRKNGQKKNFGGRGNVTVMASVSFPGMKEEFETLRLNPGATEQDVKRSYRRLALQYHPDVCKGNDCGAQFNKINHAYETVKSSLEKAKHQNCSADYDVEDLMGEGDDSWEEWMGWEGAGTLDYSSHINIYA*

Protein Length: 149

Fln nts: AAGACAGTGGTATCAACGCAGAGTAAGACAGTGGTATCAACGCAGAGTAAGACAGTGGTATCAACGCAGAGTAAGACAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGACAGTGGTATCAACGCAGAGTAAGACAGTGGTATCAACGCAGAGTAAGACAGTGGTATCAACGCAGAGTAAGACAGTGGTATCAACGCAGAGTAAGACAAGTGGTATCAACGCAGAGTAAGACAAGTGGTATCAACGCAGAGTAAGACAAGTAGGTATCAACGCAGAGTAAAGACAAGTGGTATCAACGCAGAGTAAAGACAAGTGGTATCAACGCAGAGTAAAGACAAGTGGTATCAACGCAGAGTAAAGACAAGTGGTATCAACGCAGAGTAAAGACAAGTGGTATCAACGCAGAGTAAAGCAAGTGGTAATCAACGCAGAGTAAGCAAGTAGGTAATCAACGCAGAGTAAGACAAGTAGGTAATACAACGCAGAGTAAGACAAGTAGGTAATACAACGCAGAGTAAGCCAAGTAGGTAATACAACGCAGAGTAAGACAAGTAGGTAATACAACGACAGAGTAAGACAAGTAGGTAATACAACGCAGAGTAAGACAAGTAGGTAATACAACGCAGAGTAAGACAAGTAGGTAATACAACGCAGAGTAAGACAAGTATCCCGCCTCTGAAGTGGCTTTTCGAGGTGGGTGTGATGTTCTTTTATATACTTGCGCTTGCCCACAGAGCAATTAATGTCTGCATTCTTCTCTCATAGGCCTCTCATCTTATTTTTCTCTTGTCCTCTGATACTTATACCTGCAGGCCGCAGCAATCCTTGATATTTGTTTTGGTTTTTCTGGAGGAAAGTAACTGGATTTCGTTACATCCATTTGGGATCCGGAGGGTCAGATCCGATTTCGAGCTGGGCTTCAAGCTCTGTTTGTAGGTCAGCGATTATTTTTTTAAGAGATC_-_ATGGCTGCCAAAGTTGGAAGGCTTGTGGGTGCTGACAATAACTTGTTCTTAAGAAAGAATGGGCAGAAGAAGAATTTCGGAGGCAGGGGCAATGTAACTGTGATGGCCTCTGTTTCTTTCCCTGGGATGAAAGAGGAGTTTGAGACACTGAGATTGAACCCCGGGGCTACTGAACAAGATGTGAAGAGATCCTACCGTCGCCTTGCGTTGCAGTATCATCCAGATGTTTGCAAAGGAAATGACTGTGGGGCTCAATTTAACAAGATCAACCATGCCTATGAGACTGTAAAGTCCAGTTTGGAGAAGGCAAAACATCAAAACTGCTCAGCTGATTATGATGTGGAGGATTTGATGGGAGAGGGTGATGATTCTTGGGAAGAATGGATGGGATGGGAAGGAGCTGGAACCCTTGATTATTCCTCCCATATTAACATTTATGCCTGA___TCAGATCTTCATCAGATGCTCTGTACCCATGTCCTTTTGCTTTGCATACAGTTATTGCTGCTTCTCCAGCATTCATCCCCATTTATGAGCAACCTATGAAACTCTTGCTTTTGACAACATAATAACTGTCTTATCAAGGCCATAGAGCTACTTCATTCACCTCTTGTACATACAATATCATCTTCTACTTGTATAGCTAATTTTATTTCTTACATGAGCTCCCACTGCACAAAAGACTTCAGGATCCAGCTGATACAACAGCTTGTGAGATCTTAATAAGTCATTTGTTCTGCTCCTGAGTTTTGATTATCATACTACCTGTACATATGCTGTGTTTATTTTCATCTCAACTACTGATACGCACTTGTGAGATctaactTTGTGGCCCTGGGAAGATTAT

Fln Alignment:

sp_v1.1_unigene37417___MAAKVGRLVGADNNLFLR-KNGQKKNFGGRGNVTVMASVSFPGMKEEFETLRLNPGATEQDVKRSYRRLALQYHPDVCKGNDCGAQFNKINHAYETVKSSLEKAKHQNCSADYDVEDLMGEGDDSWEEWMGWEGAGTLDYSSHINIYA
D5A9N7_______________MAAKVGRLVGANSHSFLRRKNAEKKNLGGRGNVTVMASVAFPGMKEEYGTLRLNPGATEKDVKRAYRRLALQYHPDVCKGNNCGVQFNKINDAYETVMSSLEKAKHQNCSADYHVEDLMEVGDDSWEEWMGWEGAGTLDYSSHINIYA

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
877		50		50	1.0
1064	66		33		0.99834
1787	81		18		1.0
1854		11		88	0.923564
1855		87		12	0.992554
1874	12		87		0.992554
1879			12	87	0.992554
1881			87	12	0.992554
1882		12		87	0.992554
1889	16	66	16		0.988813
1890	40			60	1.0
1891	20	60	20		0.99255
1892	20			80	0.995493
1893	20	60	20		0.99255
1894	33			66	1.0
1895		33		66	0.997452
1896	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain