SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37372

Length: 841 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene37372

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AMP deaminase, putative n=1 Tax=Ricinus communis RepID=B9T1I5_RICCO	-	-	80%
FL-Next	sp=AMP deaminase; Arabidopsis thaliana (Mouse-ear cress).	-	-	84%
Blast2go	amp deaminase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	AMP deaminase.	EC:3.5.4.6	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	89%
Blast2go	Biosynthesis of plant hormones	01070	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	89%
Blast2go	AMP deaminase activity	GO:0003876	Molecular Function	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	cytosol	GO:0005829	Cellular Component	89%
Blast2go	microsome	GO:0005792	Cellular Component	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O80452

Fln msg: Separated hits, possible frame ERROR between 154 and 250, your sequence is shorter than subject: 261 - 839

Fln protein: KHMPTPEQWINVFNPAFSYYAYYCYANLYTLNKLRESKGLTTIKFRPHSGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSGDIDHLVATFLLVHNIARGNNLRKSPSLQYLYYSSQIGLAMSPLSNNSLFLDYHRNPFPMFFARGLNVSLSTDDPLQIHLTREPLVEEYSIAASVWKLSSCDLCEIARNSVYQSGFSHALKSHWIGRNYYKRGPAGNDIHRTNVPHMRVEFRDEVWQAEMDYLYLGNPQIGEEVVP*

Protein Length: 262

Fln nts: GAAGCACATGCCAACTCCAGAACAATGGATCAATGTCTTTAATCCTGCCTTTTCATACTATGCATACTATTGCTATGCAAATTTATACACACTCAACAAGCTTCGTGAGTCGAAGGGACTTACAACAATAAAATTCCGCCCCCACTCTGGCGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTCTGGAGATATAGATCACTTGGTTGCCACATTCCTATTGGTTCACAATATTGCTcgTGGAAATAATCTAAGGAAGTCTCCTTCGTTGCAGTATTTGTATTATAGTTCTCAGATTGGTTTGGCCATGTCTCCTTTGAGTAACAATTCCCTATTCTTAGATTATCATCGAAATCCTTTCCCTATGTTCTTTGCACGTGGGCTTAATGTGTCTCTTTCTACGGATGATCCTTTACAAATTCATTTGACAAGGGAGCCTCTTGTAGAGGAGTACAGCATTGCAGCTTCAGTCTGGAAGCTTAGTTCTTGTGATCTTTGTGAAATTGCTCGTAACTCGGTTTACCAGTCTGGATTTTCTCATGCTCTTAAGTCGCATTGGATTGGAAGAAATTATTACAAAAGAGGTCCAGCGGGGAATGACATCCATAGGACTAATGTACCTCACATGCGAGTGGAATTTCGTGATGAGGTTTGGCAAGCAGAGATGGACTATTTATATCTTGGAAATCCTCAAATTGGAGAAGAGGTGGTACCATAACCAGTACACAAATGTATCAGTGATGTATTCATGCACCTAATTCTCTTGGATACTTGTA

Fln Alignment:

sp_v1.1_unigene37372___KHMPTPEQWINVFNPAFSXXXXXXXXXXXXXXKLRESKGLTTIKFRPHSGExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSGDIDHLVATFLLVHNIARGNNLRKSPXXXXXXXXXXIGLAMSPLSNNSLFLDYHRNPFPMFFARGLNVSLSTDDPLQIHLTREPLVEEYSIAASVWKLSSCDLCEIARNSVYQSGFSHALKSHWIGRNYYKRGPAGNDIHRTNVPHMRVEFRDEVWQAEMDYLYLGNPQIGEEVVP
O80452_______________KHMPTPAQWTNAFNPAFSYYVYYCYANLYVLNKLRESKGMTTITLRPHSGExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGDIDHLAATFLTCHSIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSACDLCEIARNSVYQSGFSHALKSHWIGKDYYKRGPDGNDIHKTNVPHIRVEFRDTIWKEEMQQVYLGKAVISDEVVP

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
310	25	75			0.996473
312		66	33		0.997452
313	66		33		0.997452
314			25	75	0.996473
352			25	75	0.996473
496	83		16		0.994512
499			16	83	0.994512
505	83			16	0.994512
506	83			16	0.994512
509		16	83		0.994512
510	83			16	0.994512
519	16			83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain