SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37367

Length: 856 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene37367 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA mismatch repair protein pms2, putative; K10858 DNA mismatch repair protein PMS2	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	dna mismatch repair protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	seed development	GO:0048316	Biological Process	71%
Blast2go	DNA recombination	GO:0006310	Biological Process	71%
Blast2go	mismatch repair	GO:0006298	Biological Process	71%
Blast2go	pollen development	GO:0009555	Biological Process	71%

Source	InterPros	Term	Type	Identity
Blast2go	DNA mismatch repair protein	IPR002099	-	71%
Blast2go	MutL, C-terminal, dimerisation	IPR014790	-	71%
Blast2go	Post Meiotic Segregation 2	IPR015434	-	71%

Full-Lengther Next Prediction

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
240			88	11	0.923564
241		88	11		0.923564
245			88	11	0.923564
249	11			88	0.923564
254	88		11		0.923564
255		88	11		0.923564
256	88		11		0.923564
260		11	88		0.923564
261		88	11		0.923564
262	11			88	0.923564
289	87			12	0.992554
292		12		87	0.992554
294			12	87	0.992554
295	87	12			0.992554
296		12	87		0.992554
298	12			87	0.992554
299			12	87	0.992554
302		12	87		0.992554
305		12		87	0.992554
308		25		75	1.0
309	12		87		0.992554
313	14			71	0.984337
314	14			85	0.993539
315			14	85	0.993533
316			16	83	0.994513
319		16		83	0.994512
321		16		83	0.994512
324	83	16			0.994512
325			16	83	0.994512
338		83		16	0.994512
375	16		83		0.994512
376		16		83	0.994512
377	16		83		0.994512
379		16		83	0.994512
380		16	83		0.994512
381	16	83			0.994512
382	16			83	0.994512
389		14		85	0.993533
390		85	14		0.993533
392		14	14		0.984337
393			85	14	0.993533
444		25		75	0.996486
445		25	75		0.996486
575		25		75	0.996473
746	66	33			0.997453
747	66	33			0.997452
748	66	33			0.997452
749	33		66		0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain