SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37317

Length: 466 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene37317
CGTCGTGACCTAGGATATACTCATTCTCGGTTACCTTCATTTACAAGGGAACAGGCTCAAAAGTTACGAGGGTCATTGGACTTCATTGGTGTCAATCACTATGTTACCATGTATTGTTTTGATGTTCCAAGAAAAGGTGAACCTATGTCAAGAGACTATGCTCAAGATATGTCCATTGGAATGGCAGTGGAGCGAGATGGGATTCCCCTCGGCGTCAATAGATCCATTTTGGTATGCCAGTTGTACCACAAAGCATGCAGGCAGTGCTTAAATATATTGAGGACCGTTCCCATAATATTCCTATTATTGTGTATGAAAATGGATTTTCAGAGCCTAATAATTCATCTATTCCCCTTTCTGAGGCTTTGGATGACCAATTCAGGATGGATCTCCATCATGATGTCCTTCAGTATGTGCTTGCAGCACTAAGGAATGGGTCAGACGTCCGTGGATACTTAATATGGAC

Ace file of the UniGene sp_v1.1_unigene37317 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-glucosidase n=1 Tax=Pinus contorta RepID=Q9ZT64_PINCO	-	-	6.0e-23	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	beta-glucosidase isozyme 2 precursor	-	-	2.4435e-27	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 1	IPR001360	-	2.4435e-27	63%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	2.4435e-27	63%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	2.4435e-27	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACM5

Fln msg: Separated hits, possible frame ERROR between 213 and 231, Distance to subject end: 50 aas, your sequence is shorter than subject: 155 - 415

Fln protein: RRDLGYTHSRLPSFTREQAQKLRGSLDFIGVNHYVTMYCFDVPRKGEPMSRDYAQDMSIGMAVERDGIPLxxxxxxxGMPVVPQSMQAVLKYIEDRSHNIPIIVYENGFSEPNNSSIPLSEALDDQFRMDLHHDVLQYVLAALRNGSDVRGYLIW

Protein Length: 156

Fln nts: CGTCGTGACCTAGGATATACTCATTCTCGGTTACCTTCATTTACAAGGGAACAGGCTCAAAAGTTACGAGGGTCATTGGACTTCATTGGTGTCAATCACTATGTTACCATGTATTGTTTTGATGTTCCAAGAAAAGGTGAACCTATGTCAAGAGACTATGCTCAAGATATGTCCATTGGAATGGCAGTGGAGCGAGATGGGATTCCCCTCGGxxxxxxxxxxxxxxxxxxTGGTATGCCAGTTGTACCACAAAGCATGCAGGCAGTGCTTAAATATATTGAGGACCGTTCCCATAATATTCCTATTATTGTGTATGAAAATGGATTTTCAGAGCCTAATAATTCATCTATTCCCCTTTCTGAGGCTTTGGATGACCAATTCAGGATGGATCTCCATCATGATGTCCTTCAGTATGTGCTTGCAGCACTAAGGAATGGGTCAGACGTCCGTGGATACTTAATATGGAC

Fln Alignment:

sp_v1.1_unigene37317___SRLPSFTREQAQKLRGSLDFIGVNHYVTMYCFDVP-RKGEPMSRDYAQDMSIGMAVERDGIPLGxxxxxxGMPVVPQSMQAVLKYIEDRSHNIPIIVYENGFSEPNNSSIPLSEALDDQFRMDLHHDVLQYVLAALRNGSDVRGYLIW
D5ACM5_______________SRLPLLTEKQSREIRQSFDFIGLNHYSTNYVEDAPAAHANNYERDYFTDLSVRVTVERDGIPIGxxxxxxGFGSVPWGFQELLEYIRQHYGNPPVVVTECGYPDLSNDSIPVAEALNDTNRINYYHDYLQYMLAAIRNGSNTRGFFVW

SNPs (tot: 4)

Position	A %	G %	T %	Probability
292	75	25		0.996473
325		75	25	0.996473
335		25	75	0.996478
364	75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain