SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37309

Length: 576 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene37309
CGTCGTGACCTTGGCTGTCACGCAATTTTTCTTCTTTCGATAAGTTCTTTAGGCCGGAGCACAATGGCTGGGGCGGTTTCTGGTAGTGTTGGAACCCTTCATTCTACATCAGAGGTCTGTGTAAGGTCTCTGCAGGCTAGAGAAAACCACCTATATCGCCGCCAGAGATTGCCCTTCAGGCCTGGATGCAGCTTTCGAAAGAGGATTTCGACTAATGGGTCGAGACTCAAGGCAAAATCAGTTTTTTCCATTCACAGTTTCTCCAGTTTGCTAGCATGTTCAAAATGGGCACATGCGTCGACATCTTTTGGAGGAGCTCTGGATTATAGACGTAACAACCCAAGTAGTTTGATTGAAGATTCAAGTATCATGGCCTCCAAGGCTGAACCAGGGGAGCTTTCCACTGATGATTCAGGCGAAGGCGTGGTTGTATTAGTTATTGGAGGAGGAGGCAGAGAGCATGCACTTTGCTATGCATTGCAGCGATCATCTTCTTGTGATGCAGTGTTCTGTGCCCCAGGAAATGCTGGCATAGCAGATTCAGGAGATGCAACTTGTATAATGGATCTTGACATT

Ace file of the UniGene sp_v1.1_unigene37309 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoribosylamine-glycine ligase, putative n=1 Tax=Ricinus communis RepID=B9SKC3_RICCO	-	-	5.0e-14	90%
FL-Next	sp=Phosphoribosylamine--glycine ligase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	78%
Blast2go	phosphoribosylamine--glycine ligase	-	-	1.81802e-14	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoribosylamine--glycine ligase.	EC:6.3.4.13	-	1.81802e-14	85%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	1.81802e-14	85%
Blast2go	Metabolic pathways	01100	1.81802e-14	85%
Blast2go	Biosynthesis of secondary metabolites	01110	1.81802e-14	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	purine nucleotide biosynthetic process	GO:0006164	Biological Process	1.81802e-14	85%
Blast2go	phosphoribosylamine-glycine ligase activity	GO:0004637	Molecular Function	1.81802e-14	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.81802e-14	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pre-ATP-grasp fold	IPR013817	-	1.81802e-14	85%
Blast2go	Pre-ATP-grasp fold	IPR016185	-	1.81802e-14	85%
Blast2go	Phosphoribosylglycinamide synthetase, N-terminal	IPR020562	-	1.81802e-14	85%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P52420

Fln msg: Distance to subject end: 387 aas, your sequence is shorter than subject: 171 - 532

Fln protein: MAGAVSGSVGTLHSTSEVCVRSLQARENHLYRRQRLPFRPGCSFRKRISTNGSRLKAKSVFSIHSFSSLLACSKWAHASTSFGGALDYRRNNPSSLIEDSSIMASKAEPGELSTDDSGEGVVVLVIGGGGREHALCYALQRSSSCDAVFCAPGNAGIADSGDATCIMDLDI

Protein Length: 172

Fln nts: CGTCGTGACCTTGGCTGTCACGCAATTTTTCTTCTTTCGATAAGTTCTTTAGGCCGGAGCACA_-_ATGGCTGGGGCGGTTTCTGGTAGTGTTGGAACCCTTCATTCTACATCAGAGGTCTGTGTAAGGTCTCTGCAGGCTAGAGAAAACCACCTATATCGCCGCCAGAGATTGCCCTTCAGGCCTGGATGCAGCTTTCGAAAGAGGATTTCGACTAATGGGTCGAGACTCAAGGCAAAATCAGTTTTTTCCATTCACAGTTTCTCCAGTTTGCTAGCATGTTCAAAATGGGCACATGCGTCGACATCTTTTGGAGGAGCTCTGGATTATAGACGTAACAACCCAAGTAGTTTGATTGAAGATTCAAGTATCATGGCCTCCAAGGCTGAACCAGGGGAGCTTTCCACTGATGATTCAGGCGAAGGCGTGGTTGTATTAGTTATTGGAGGAGGAGGCAGAGAGCATGCACTTTGCTATGCATTGCAGCGATCATCTTCTTGTGATGCAGTGTTCTGTGCCCCAGGAAATGCTGGCATAGCAGATTCAGGAGATGCAACTTGTATAATGGATCTTGACATT

Fln Alignment:

sp_v1.1_unigene37309___REHALCYALQRSSSCDAVFCAPGNAGIADSGDATCIMDLDI
P52420_______________REHALCHALKRSPSCDSVLCAPGNAGISSSGDATCVPDLDI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain