SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37301

Length: 478 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene37301
ACAAATACAGTCAGGACAAAGTAGACCACGTTTGCATTACCAGAGTGTCATCGGTTGCTCAAGGATGATCTTCTAGCTGCACTTTCAGAGCTACAGAGGCAGAATGAATATGAGCTAGCTATAAAGATATTTGATCTTGTGCGCAAGGAAGTGTGGTACAAGCCAGACATATATCTTTATGCTGATATGATAATGCTCATGGCAAGAAATAAGCTAATTGATAAGGCCGAGGAACTTTTTTCACTATTAAAAGAGGAGGGCTTGGATCCGGATACCAGGGTTTGCACCGAGTTATTAGGTGGTTACACACGTGCTGGCATGATTGAAAAGGCAATGGAAATTTATGAAATGATGAAGGTGCAATCAGGATGTAAACCAAATGAACTAACATTCACAATTTTGTTGAATAGTCTTGAAAGAGTGGAAGAGAGGGTTCTAGCTAATGTTGTTAGGAAGGATGCTTTTGAATATTTGGACG

Ace file of the UniGene sp_v1.1_unigene37301

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] sp\|Q9STF9.1\|PP266_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g46870 emb\|CAB51178.1\| putative protein [Arabidopsis thaliana] dbj\|BAC42475.1\| unknown protein [A	-	-	5.0e-24	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	protein	-	-	1.25839e-40	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	1.25839e-40	68%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.25839e-40	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	1.25839e-40	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSL5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 16 aas, your sequence is shorter than subject: 159 - 274

Fln protein: TNTVRTK*TTFALPECHRLLKDDLLAALSELQRQNEYELAIKIFDLVRKEVWYKPDIYLYADMIMLMARNKLIDKAEELFSLLKEEGLDPDTRVCTELLGGYTRAGMIEKAMEIYEMMKVQSGCKPNELTFTILLNSLERVEERVLANVVRKDAFEYLD

Protein Length: 160

Fln nts: ACAAATACAGTCAGGACAAAGTAGACCACGTTTGCATTACCAGAGTGTCATCGGTTGCTCAAGGATGATCTTCTAGCTGCACTTTCAGAGCTACAGAGGCAGAATGAATATGAGCTAGCTATAAAGATATTTGATCTTGTGCGCAAGGAAGTGTGGTACAAGCCAGACATATATCTTTATGCTGATATGATAATGCTCATGGCAAGAAATAAGCTAATTGATAAGGCCGAGGAACTTTTTTCACTATTAAAAGAGGAGGGCTTGGATCCGGATACCAGGGTTTGCACCGAGTTATTAGGTGGTTACACACGTGCTGGCATGATTGAAAAGGCAATGGAAATTTATGAAATGATGAAGGTGCAATCAGGATGTAAACCAAATGAACTAACATTCACAATTTTGTTGAATAGTCTTGAAAGAGTGGAAGAGAGGGTTCTAGCTAATGTTGTTAGGAAGGATGCTTTTGAATATTTGGACG

Fln Alignment:

sp_v1.1_unigene37301___RLLKDDLLAALSELQRQNEYELAIKIFDLVRKEVWYKPDIYLYADMIMLMARNKLIDKAEELFSLLKEEGLDPDTRVCTELLGGYTRAGMIEKAMEIYEMMKVQSGCKPNELTFTILLNSLERVEERVLANVVRKDAFEYLD
C0PSL5_______________RLLKKDLLAVLQELQRQDQCDLALQVFKAVRKEMWYRPNLSLHADMIMMLGRNKRIEEVEAVLLELQKEGLRPDTRVCTEIIGAFIHVGMVQNAMETFELMK-QTDCHPDKSTFTVLIQGLQRLGEIDLATAVREQSVQYLD

SNPs (tot: 3)

Position	A %	C %	G %	Probability
209		80	20	0.995493
389	75		25	0.996473
437	50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain