SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37272

Length: 723 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene37272

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase 9 n=2 Tax=Arabidopsis RepID=KCS9_ARATH	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	beta-ketoacyl- synthase	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	75%
Blast2go	very long-chain fatty acid metabolic process	GO:0000038	Biological Process	75%
Blast2go	cuticle development	GO:0042335	Biological Process	75%
Blast2go	response to light stimulus	GO:0009416	Biological Process	75%

Source	InterPros	Term	Type	Identity
Blast2go	Chalcone/stilbene synthase, C-terminal	IPR012328	-	75%
Blast2go	FAE1/Type III polyketide synthase-like protein	IPR013601	-	75%
Blast2go	Thiolase-like, subgroup	IPR016038	-	75%
Blast2go	Thiolase-like	IPR016039	-	75%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
158	33			66	1.0
159	33		66		1.0
198		28	71		1.0
286	71	28			1.0
289		85		14	0.993533
313	66		33		1.0
356	75		25		0.996474
357	25		75		0.996473
364	75	25			0.996473
369		25		75	0.996473
405		75		25	0.996473
418	33	66			0.997453
420	33		66		0.997452
430		33	66		0.997452
453		66		33	0.997452
462		33		66	0.997452
517			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain