SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37253

Length: 489 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene37253
TTGCTGCTAAATACCTTGAACGGGCTATCGAGAAATGGGAGGGTGATGTTCAAGATCTGGCACAGGTTCATAATGCACTTGGCTTCAGTTATGCAAGTGATGGAAAATTAGAAAAGGGTATCATACACTATGAGAAGGCTGTGGAACTTCAGCCGGGATATGTAACAGCTTGGAATAATATGGGTGATGCCTTTGAGAAGAAGAAGGATCTGAAAGCTGCACTCAAAGCATATAATCAAGCACTTATTTTGGACCCAAATGATAAAGTCGCAAGAACTTGTCGAGATTTCATAAAAGAGCGTGTGGACCTTTTTGAGGGTATTCCTTCTAAACCAAAAGGTTCATTGTAATTAGACGCTTAGCTACTCCAATGATGTTGCTTCTGTTCTAAGACATGCATACCTCGATTAAGGTATCTAGTCACTTGTTTTTGCTTACACAAGTTGCAAGTCAGATTTCTATTGCAGCATATTTGCTTTTAAATTTTTG

Ace file of the UniGene sp_v1.1_unigene37253 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tetratricopeptide repeat protein, tpr, putative	-	-	7.0e-31	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	tetratricopeptide repeat -containing protein	-	-	0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	photosystem I assembly	GO:0048564	Biological Process	0.0	83%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Blast2go	Tetratricopeptide TPR-1	IPR001440	-	83%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	83%
Blast2go	Tetratricopeptide repeat-containing domain	IPR013026	-	83%
Blast2go	Tetratricopeptide TPR2	IPR013105	-	83%
Blast2go	Tetratricopeptide repeat	IPR019734	-	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQP2

Fln msg: your sequence is shorter than subject: 116 - 316

Fln protein: AAKYLERAIEKWEGDVQDLAQVHNALGFSYASDGKLEKGIIHYEKAVELQPGYVTAWNNMGDAFEKKKDLKAALKAYNQALILDPNDKVARTCRDFIKERVDLFEGIPSKPKGSL*

Protein Length: 117

Fln nts: TTGCTGCTAAATACCTTGAACGGGCTATCGAGAAATGGGAGGGTGATGTTCAAGATCTGGCACAGGTTCATAATGCACTTGGCTTCAGTTATGCAAGTGATGGAAAATTAGAAAAGGGTATCATACACTATGAGAAGGCTGTGGAACTTCAGCCGGGATATGTAACAGCTTGGAATAATATGGGTGATGCCTTTGAGAAGAAGAAGGATCTGAAAGCTGCACTCAAAGCATATAATCAAGCACTTATTTTGGACCCAAATGATAAAGTCGCAAGAACTTGTCGAGATTTCATAAAAGAGCGTGTGGACCTTTTTGAGGGTATTCCTTCTAAACCAAAAGGTTCATTGTAA___TTAGACGCTTAGCTACTCCAATGATGTTGCTTCTGTTCTAAGACATGCATACCTCGATTAAGGTATCTAGTCACTTGTTTTTGCTTACACAAGTTGCAAGTCAGATTTCTATTGCAGCATATTTGCTTTTAAATTTTTG

Fln Alignment:

sp_v1.1_unigene37253___AAKYLERAIEKWEGDVQDLAQVHNALGFSYASDGKLEKGIIHYEKAVELQPGYVTAWNNMGDAFEXXXXXXXXXXAYNQALILDPNDKVARTCRDFIKERVDLFEGIPSKPKG
C0PQP2_______________AAKYLEQAIEKWEGDVQDLAQVHNALGFSYASDGKLDKGIIHYEKAVELQPGYVTAWNNMGDAFEKKKDLKAALKAYDRALLFDPNDKVARSCRDLLKERVDLFEGIPAKPKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain