SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37238

Length: 1052 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene37238

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	HMA2; HMA2; cadmium-transporting ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	cadmium-transporting atpase-like protein	-	-	69%

Source	ECs	Term	Type	e value	Identity
AutoFact	Cadmium-exporting ATPase.	EC:3.6.3.3	-	0.0	44%
AutoFact	Zinc-exporting ATPase.	EC:3.6.3.5	-	0.0	44%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion transport	GO:0006829	Biological Process	69%
Blast2go	cadmium ion transport	GO:0015691	Biological Process	69%
Blast2go	zinc ion transmembrane transporter activity	GO:0005385	Molecular Function	69%
Blast2go	protein binding	GO:0005515	Molecular Function	69%
Blast2go	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	69%

Source	InterPros	Term	Type	Identity
Blast2go	Cof protein	IPR000150	-	69%
Blast2go	ATPase, P-type, H+ transporting proton pump	IPR000695	-	69%
Blast2go	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	69%
Blast2go	Haloacid dehalogenase-like hydrolase	IPR005834	-	69%
Blast2go	ATPase, P-type, heavy metal translocating	IPR006416	-	69%
Blast2go	ATPase, P-type, ATPase-associated domain	IPR008250	-	69%
Blast2go	ATPase, P-type phosphorylation site	IPR018303	-	69%
Blast2go	HAD-like domain	IPR023214	-	69%
Blast2go	ATPase, P-type, cytoplasmic domain N	IPR023299	-	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ20

Fln msg: Distance to subject end: 58 aas, your sequence is shorter than subject: 350 - 998

Fln protein: ARYYTPVIVVAALAMVLAPCIDRSLGFRNWAYKALVLVVTACPCALVISTPVATACGLAHAARVGLLIKGGKYLETLGKLKVVAFDKTGTLTEGIFRVVDVMFVESETINVQKWLSWIASLESRSSHPMSVAIVSHCRQQGLEPSAEVKNFTILEGEGICGEVDNQKIYIGNSRLSNRLGWTKYVPEDWDIRGATVGYVGTEENFVGAFSVADNCRSEAAAALDRLKKLGIRLAMLTGDTASSAALIEEEVGEIQVHSQLLPEDKVRIIGELKQVGKTAMIGDGINDAPALAAADIGIAMGVAGSAVAMETSDIALMSNDIRKIAAAVKIGRRTLRKIYINVAISVVTKA

Protein Length: 351

Fln nts: TGCAAGATATTATACTCCAGTTATTGTGGTGGCAGCTCTAGCAATGGTATTAGCCCCTTGCATTGATCGCTCGCTTGGATTTCGCAACTGGGCTTATAAAGCCTTAGTTCTTGTGGTAACCGCTTGCCCATGCGCCTTGGTAATCTCAACACCAGTGGCCACGGCGTGTGGGTTGGCCCATGCTGCTAGAGTAGGGCTCCTTATCAAAGGTGGGAAGTATCTGGAAACCTTAGGGAAACTTAAGGTGGTAGCGTTTGATAAAACTGGAACACTCACGGAAGGAATATTCAGGGTGGTAGATGTAATGTTTGTTGAGTCTGAGACCATCAATGTGCAGAAATGGTTATCATGGATAGCAAGCCTTGAGAGTAGATCAAGTCATCCCATGTCAGTTGCAATTGTCTCACACTGCCGACAGCAAGGCCTAGAGCCATCAGCTGAGGTAAAGAATTTTACCATCCTGGAAGGAGAAGGCATATGTGGAGAGGTGGACAATCAGAAAATTTACATCGGAAATTCTCGGTTATCAAATCGATTAGGTTGGACCAAATATGTACCAGAAGACTGGGACATCCGAGGAGCAACAGTCGGATATGTTGGAACAGAGGAAAATTTTGTAGGGGCCTTCAGTGTGGCTGATAATTGCCGATCAGAAGCGGCAGCAGCTCTTGATAGACTCAAGAAACTAGGAATTCGACTAGCTATGCTCACTGGGGATACAGCCAGCTCAGCTGCTCTCATTGAAGAAGAGGTTGGGGAGATTCAAGTTCATTCCCAACTACTCCCAGAGGACAAGGTCCGAATTATCGGAGAGTTAAAGCAGGTGGGCAAGACAGCCATGATAGGCGATGGAATCAACGATGCACCAGCATTAGCCGCAGCAGACATAGGAATAGCCATGGGCGTAGCAGGTTCGGCTGTGGCCATGGAGACTTCAGACATAGCCCTCATGTCTAATGATATCAGGAAAATAGCAGCAGCAGTGAAAATTGGCCGAAGGACATTGCGGAAAATATACATAAACGTTGCCATCTCCGTTGTCACAAAGGCTG

Fln Alignment:

sp_v1.1_unigene37238___ALVLVVTACPCALVISTPVATACGLAHAARVGLLIKGGKYLETLGKLKVVAFDKTGTLTEGIFRVVDVMFVESETINVQKWLSWIASLESRSSHPMSVAIVSHC-------------RQQGLEPS-----AEVKNFTILEGEGICGEVDNQKIYIGNSRLSNRLGWTKYVP-------EDWDIRGATVGYVGTEENFVGAFSVADNCRSEAAAALDRLKKLGIRLAMLTGDTASSAALIEEEVGEIQVHSQLLPEDKVRIIGELKQVG-KTAMIGXXXXXXXXXXXXXXXXXXXVAGSAVAMETSDIALMSNDIRKIAAAVKIGRRTLRKIYINVAISV
B8LQ20_______________AISVLVIACPCALGLATPTAVMVATGIGATHGVLIKGGDALERAQKIQCVVFDKTGTLTKGKPSVTSAKVLSD--MQRGEFLRIVASAEASSEHPLARAVVDYAYHFHFFGEPPKDMDMQGLRTKNTAWLLTASKFEALPGKGVRCSIEGTEILVGNRKLMSEDG--VFIPSVAEEYLKDMEQHARTGILVAFDKELVGMLAISDPLKREAAVVIEGLKKMGILPIMVTGDNWTTARAVAQELGIEDVKAEVIPAGKAEVIRSLQKDGTMVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNNLEDVITAIDLSKKTFARIRLNYVFAM

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
759		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain