SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37225

Length: 725 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene37225

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATXR5; DNA binding / protein binding [Arabidopsis thaliana] emb\|CAB89351.1\| putative protein [Arabidopsis thaliana]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	histone-lysine n-methyltransferase	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	79%
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	79%
Blast2go	pollen development	GO:0009555	Biological Process	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SET domain	IPR001214	-	0.0	79%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
187		14	85		0.993533
189	85			14	0.993533
191		85	14		0.993533
193			14	85	0.993533
200	85		14		0.993533
201		14		85	0.993533
203	85		14		0.993533
208	85			14	0.993533
209		14	85		0.993533
415	66	33			0.991987
416	66		33		0.991987
562		16		83	0.994513

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain