SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37216

Length: 1001 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene37216 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GLIP6; carboxylesterase/ lipase [Arabidopsis thaliana] sp\|Q9C996.1\|GLIP6_ARATH RecName: Full=GDSL esterase/lipase 6; AltName: Full=Extracellular lipase 6; Flags: Precursor gb\|AAG51687.1\|AC016972_6 putative proline-rich APG protein; 47176-45828 [Arabidopsi	-	-	1.0e-36	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	zinc finger	-	-	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, GDSL	IPR001087	-	0.0	61%
Blast2go	Lipase, GDSL, active site	IPR008265	-	0.0	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU57

Fln msg: Distance to subject end: 132 aas, your sequence is shorter than subject: 247 - 375

Fln protein: MEFIMKISVYWFVICWLGRSIAAAENGHKKPNYPPALFVFGDSLADAGNNNFIPKCAARADFPPYGMSFFGHPTGRFTNGRTAFDFVATYLELPFPSPFLQPRANFSTGINFASGGCGLLNSTGQGLNVMSFNHQIWQFTHFASTLVKKEGRFAVESYLSKSLYCISVGGNDIVRYMLNSTYQNTTTPQELVTFLVNKYDQYLSRLYHSGARKFLLFDISTLGCTPSSRLLGLQFGYSKANGGCLDI

Protein Length: 248

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTTTTAATGGAATTGAAGAGATTGGGCTACTCCGCTGCTCAAACAAGAAGCTGTACCGCCAAAAGAAAACAGATTCTGACTTACCGTGACAAAAGTTCAGGTCGATTTTGAAAAATTATGTAAGTTGGTCGGTACAGAAACCATGGTGGGCAGTGGTGGGTAGTTATGCTCTAGGCTGAGACACTCAGATCCAGATCCAAGTTGCAGTTGTTGAAGGATTAGGTTTTGTTCA_-_ATGGAGTTTATCATGAAGATAAGTGTTTACTGGTTCGTTATTTGTTGGCTTGGAAGATCCATCGCAGCAGCAGAGAATGGTCATAAGAAGCCTAATTATCCGCCTGCACTGTTCGTGTTTGGGGATTCATTGGCAGATGCTGGCAATAACAATTTCATTCCCAAATGTGCTGCTCGTGCAGACTTCCCTCCTTATGGCATGTCCTTCTTCGGCCATCCCACAGGCCGCTTCACAAATGGCCGCACTGCCTTTGATTTCGTAGCAACCTACCTGGAGTTGCCCTTCCCCTCCCCCTTCCTGCAGCCACGAGCAAATTTCTCTACTGGGATTAATTTTGCTTCCGGAGGTTGTGGACTGCTGAATTCCACAGGCCAAGGATTGAATGTTATGTCATTTAATCATCAAATATGGCAATTTACACACTTTGCTTCAACTTTAGTGAAGAAGGAGGGACGTTTTGCTGTTGAATCTTACCTGTCCAAGTCCTTATACTGTATTTCAGTTGGAGGCAACGACATTGTTAGATACATGCTGAACTCTACTTACCAAAATACTACTACTCCCCAGGAGCTAGTTACATTCTTGGTTAACAAATATGACCAATACTTATCAAGGCTTTACCACTCCGGGGCAAGAAAATTCCTTTTATTCGATATCTCCACCTTGGGTTGCACTCCATCTTCGAGACTGCTTGGGCTACAGTTTGGGTATAGTAAAGCCAATGGGGGATGTCTAGATATAG

Fln Alignment:

sp_v1.1_unigene37216___MEFIMKISVYWFVICWLGRSIAAAENGHKKPNYPPALFVFGDSLADAGNNNFIPKCAARADFPPYGMSFFGHPTGRFTNGRTAFDFVATYLELPFPSPFLQPRANFSTGINFASGGCGLLNSTGQGLNVMSFNHQIWQFTHFASTLVKKEGR---FAVESYLSKSLYCISVGGNDI-VRYMLNSTYQNTTTPQELVTFLVNKYDQYLSRLYHSGARKFLLFDISTLGCTPSSRLLGLQFGYSKANGGCLD
A9NU57_______________MEFFTVLFVPLFIFPLPG---VTAINYHDRIHVP-AMFLFGDSLADAGNNDFIPNSTAKANFPPYGETFFHRPTGRFTNGRTAFDFIASILKLPFPPPYLKPRSDFSHGINFASGGSGILDSTGNDMNIIPLSLQIRQFVANYSSSLKQKGAGGVYSAKTHLSQSLYVISSGGNDIALNYLLNTSFQRTTSAQDFVKLLLSKYNEYLLSLYHTGARNFLVLDIPPVGCVPSSRLAGMK----AWNGGCLE

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
588		20	80		0.995493
589	80	20			0.995493
590	80	20			0.995493
591	80		20		0.995493
598		20		80	0.995493
603	80			20	0.995493
606	80		20		0.995493
611	20	80			0.995493
664		75		25	0.996473
682	75		25		0.996473
770		16		83	0.994512
771		16	83		0.994512
774	85			14	0.993533
784		16	83		0.994512
785		16	83		0.994512
802		60		40	1.0
806	80	20			0.995493
857	75	25			0.996475
858		25		75	0.996478
859	75	25			0.996475
917	33		66		0.997467

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain