SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37208

Length: 1040 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene37208

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to midasin-related n=1 Tax=Vitis vinifera RepID=UPI00019863A5	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	51%
Blast2go	type a von willebrand factor domain-containing protein	-	-	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	von Willebrand factor, type A	IPR002035	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HXY6

Fln msg: Distance to subject end: 454 aas, your sequence is shorter than subject: 346 - 4800

Fln protein: AATADQLDDNKNVNKSITVEDDLIEKEAAPPVNEIEDIVDVEDNGVLQQNVKNTSVNMKTEKQVQNKFVDNVPSCSQIGENEMDIECENQDRSQSESFVSIERQYQGTARQSNTQFATSDQAWTEEDVKNLRRDIEMIFKEFHTSHENAAIVWAKYEQLTTRLSQDLAEQLRLVMEPTLASKLEGDYQTGKRINMKKVIPYIASQFQKDKIWLRRTKPNKRQYQIVLAIDDSRSMSESRCGHMAIEALITICRAMSQLEVGQLAVASFGEKGNVHMLHDFDQPFSSEVALQIISKFSFKQDNTIADEPVVDLLKYLTNLLDHVAMRSRAPSGRTDIQQLVLIIADG

Protein Length: 347

Fln nts: TGCTGCTACTGCTGATCAACTTGATGATAACAAAAATGTGAACAAATCAATTACAGTGGAAGATGATCTTATTGAGAAAGAGGCTGCACCCCCTGTAAATGAGATTGAAGATATTGTAGATGTAGAAGACAATGGTGTGTTACAGCAAAATGTTAAAAATACTAGTGTGAATATGAAAACTGAGAAACAAGTGCAGAATAAATTTGTTGATAATGTTCCGTCTTGCTCACAAATTGGGGAGAATGAGATGGATATTGAGTGTGAAAACCAAGACAGAAGTCAGTCAGAGAGTTTTGTGTCAATTGAAAGACAGTATCAAGGTACAGCTAGACAATCAAATACTCAATTTGCAACAAGTGACCAAGCTTGGACTGAAGAAGATGTAAAAAATTTGAGGAGGGATATTGAGATGATATTTAAGGAATTTCACACCAGTCATGAAAATGCTGCTATAGTTTGGGCAAAATACGAGCAGCTTACGACAAGACTTTCCCAAGACCTGGCAGAGCAGTTGAGATTAGTCATGGAGCCAACTTTAGCAAGTAAGCTTGAAGGGGATTACCAAACAGGGAAGCGGATAAATATGAAAAAGGTTATTCCTTACATTGCAAGCCAGTTTCAAAAGGATAAGATCTGGCTTCGGCGCACAAAGCCCAACAAGAGACAATACCAGATTGTTTTGGCAATAGATGATTCAAGAAGTATGTCTGAAAGTCGTTGTGGGCACATGGCTATAGAAGCTCTCATTACGATATGCAGGGCAATGTCACAATTGGAAGTGGGACAGTTGGCAGTTGCAAGTTTTGGAGAGAAAGGTAATGTCCATATGCTGCATGACTTCGATCAGCCTTTCTCCAGTGAAGTGGCCCTCCAGATTATTTCAAAATTTTCCTTCAAGCAAGATAATACTATAGCAGATGAACCTGTTGTTGACCTCCTCAAATACTTGACCAATTTGTTGGATCATGTTGCAATGAGATCACGTGCACCTTCTGGTCGAACCGACATTCAACAACTTGTTTTAATTATTGCAGATGGCC

Fln Alignment:

sp_v1.1_unigene37208___ATADQLDDNKNVNKSITVEDDLIEKEAAPPVNEIEDIVDVEDNGVLQQNVKNTSVNMKTEKQVQNKFVDNVPSCSQIGENEMDIECENQDRSQSESFVSIERQYQGTARQSNTQFATSDQAWTEEDVKNLRRDIEMIFKEFHTSHENAAIVWAKYEQLTTRLSQDLAEQLRLVMEPTLASKLEGDYQTGKRINMKKVIPYIASQFQKDKIWLRRTKPNKRQYQIVLAIDDSRSMSESRCGHMAIEALITICRAMSQLEVGQLAVASFGEKGNVHMLHDFDQPFSSEVALQIISKFSFKQDNTIADEPVVDLLKYLTNLLDHVAMRSRAPSGRTDIQQLVLIIADG
F6HXY6_______________ATFDQIDKNITQNEP-DVDGVMAQKEHLTKENEKQNSET--------DPIKSSALNLKKRIEEQMQISDSEVSPKEISP-EVQSQGDGDPGSVSESLVSIKRSYLNEDIYQLSKLSVSDELRKAKNLEEASSDMK----------DNAAALWRRYELLTTRLSQELAEQLRLVMEPTLASKLQGDYKTGKRINMKKVIPYIASHYRKDKIWLRRTRPNKRDYQVVIAVDDSRSMSESCCGDVAIEALVTVCRAMSQLEVGNLAVASYGKEGNIRLLHDFDQSFTGEAGIKMISNLTFKQENTIKDEPVVDLLKYLNNMLDTAVANARLPSGQNPLQQLVLIIADG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
523	50		50		1.0
647	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain