SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37204

Length: 976 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene37204

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	kinesin motor protein-related	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	kinesin heavy	-	-	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Kinesin, motor domain	IPR001752	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: Distance to subject end: 303 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 214 - 509

Fln protein: MTGPHVITEETWGVNYRALNDLFEISKKRTDVFTYHVGVQMIEIYNEQVRDLLATDGSNRRLEIRNNSQQNGLNVPDANLVSVTSTFDVINLMNIGQKNRVVGATALNDRSSRSHSVLTVHVQGTDLTTGSILRGCLHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIAALAQKSSHVPYRNSKLTQLLQDSLGGQAKALMFAHISP

Protein Length: 215

Fln nts: ATGGGGAGGAAAATAGGCAACTATACAACCAAGTACAAGATCTGAAAGGAAGCATAAGAGTGTATTGTCGAGTCAGGCCATTCCTGCCTGGACAGGATGACAGACGATCTACAGTGGATTTTGTTGGAGAAAATGGCACTCTTATTATTGTTAATCCCAACAAGCATGGAAAAGATGCACACAAGACATTTTCCTTCAACAAAGTGTTTGCATCATCTGCCACTCAAGAGGAAGTTTTTCTAGATACACAGCCTTTAATCAGATCTGTTTTGGATGGCTACAATGTTTGTATTTTTGCATATGGACAAACAGGCTCCGGAAAGACATATACC_-_ATGACTGGTCCACATGTAATTACGGAAGAGACTTGGGGAGTGAACTACAGGGCACTGAACGACTTATTTGAAATCTCTAAAAAGAGGACGGATGTGTTCACGTATCACGTTGGAGTTCAAATGATAGAGATATATAATGAGCAAGTGAGAGATCTTCTTGCCACGGACGGTTCCAACCGGAGGCTAGAAATCCGCAACAATTCTCAGCAGAATGGACTCAATGTACCCGATGCAAATTTGGTATCAGTTACATCCACATTCGACGTTATCAATTTGATGAACATTGGACAAAAGAATCGTGTCGTTGGAGCAACTGCTTTGAATGATCGTAGCAGTCGTTCACACAGTGTTTTGACAGTGCATGTCCAAGGAACAGATTTGACCACAGGGTCCATCCTTCGAGGATGCCTTCATTTGGTGGACCTTGCTGGAAGTGAGAGGGTAGATAAATCTGAGGCTACAGGAGACCGGTTGAAGGAAGCCCAACACATCAATAAATCCCTTTCAGCCCTAGGGGATGTCATTGCTGCACTTGCACAAAAGAGTTCACATGTCCCTTATCGGAATAGCAAGCTAACACAGTTACTTCAAGATTCCTTAGGGGGACAGGCAAAAGCTCTTATGTTTGCCCATATAAGTCCTGA

Fln Alignment:

sp_v1.1_unigene37204___YHVGVQMIEIYNEQVRDLLATDGSNRRLEIRNNSQQNGLNVPDANLVSVTSTFDVINLMNIGQKNRVVGATALNDRSSRSHSVLTV----HVQGTDLTTGSILRGCLHLVDLAGSER-VDKSEATGDRLKEAQHINKSLSALGDVIAALAQKSSHVPYRNSKLTQLLQDSLGGQAKALMFAHISP
D5ACB2_______________FRLWLSFFEIYGGKLYDLL---GDRRKLCMREDARQQ-VCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIKKHGEGKELKGGRTV-GKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSP

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
378		66		33	0.997452
379			33	66	0.997452
380	66		33		0.997452
381		66	33		0.997452
732	14	85			0.993533
735			14	85	0.993533
736		85	14		0.993533
747		14		85	0.993533
770	20		80		0.995493
775	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain