SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37203

Length: 580 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene37203 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phenylcoumaran benzylic ether reductase-like protein n=1 Tax=Populus trichocarpa RepID=B9HHE0_POPTR	-	-	3.00004e-41	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	phenylcoumaran benzylic ether reductase -like protein	-	-	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NmrA-like	IPR008030	-	0.0	77%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
357	62		37		1.0
377	14		85		0.993533
393	28		71		1.0
419	14		85		0.993533
420	83		16		0.994512
426	16			83	0.994512
437		16		83	0.994512
438		20		80	0.995493
440	20			80	0.995493
445	25		75		0.996473
461	75		25		0.996473
462		75		25	0.996473
463	25		75		0.996473
468	25		75		0.996473
493		75		25	0.996473
501		75		25	0.996473
524		66		33	0.997467
561		33		66	0.997453
571		33		66	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain