SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37202

Length: 955 nt

Origin of reads: Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene37202 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	prephenate dehydratase, putative (EC:4.2.1.51)	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	arogenate prephenate dehydratase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arogenate dehydratase.	EC:4.2.1.91	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	82%
Blast2go	Biosynthesis of phenylpropanoids	01061	82%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	82%
Blast2go	Biosynthesis of plant hormones	01070	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	arogenate dehydratase activity	GO:0047769	Molecular Function	0.0	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Blast2go	Prephenate dehydratase	IPR001086	-	82%
Blast2go	Amino acid-binding ACT	IPR002912	-	82%
Blast2go	Prephenate dehydratase, conserved site	IPR018528	-	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ85

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 32 aas, your sequence is shorter than subject: 317 - 402

Fln protein: S*PWLSLSLILFI*FHKFFVLLETYSSVIQLTIPAAYYFSSGPLSLTDLAPSSCHGSQVRVAYQGVPGAYSEVAALKAYPQCEAVPCEQFEAAFQAVELWTVDRAVLPIENSLVGSIHRNYDLLLSHNLHIVGEVQLPVQHCLLGRLRCEETNIRRVVSHPQALAQCEKALSELGVALENMDDTASAAKFIATNNYRDTGAVASARAAEIYGLDILLNGIQDDFYNVTRFLMLARDPIMPRTDRPFKTSIVFTVDDRPGAVFKALAVFAFRNINLTKQIEGRPQRKRPLRVVDDRNSGTAKYFDYLFYVDFEASMAD

Protein Length: 318

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCTCATATTGTTCATATAGTTTCACAAATTTTTTGTTTTGTTGGAAACTTACTCATCTGTTATCCAACTCACAATACCTGCCGCATACTATTTTTCTTCAGGGCCTTTATCTTTAACAGATCTAGCTCCTTCATCATGCCATGGTTCACAAGTTCGTGTAGCCTATCAGGGTGTTCCAGGAGCATATAGTGAGGTTGCAGCTTTGAAAGCCTATCCACAGTGCGAGGCAGTTCCTTGTGAACAGTTTGAAGCTGCATTCCAGGCAGTCGAACTCTGGACAGTTGACAGAGCAGTTCTTCCCATAGAGAATTCTCTTGTTGGCAGCATTCACCGCAACTATGATTTGCTACTTAGTCACAATTTGCATATAGTGGGTGAAGTCCAGCTTCCTGTCCAGCATTGCCTTCTTGGACGTCTCCGGTGTGAAGAAACAAATATTAGACGTGTTGTGAGTCATCCCCAGGCTCTTGCTCAATGCGAGAAGGCTTTAAGCGAGTTGGGTGTTGCACTGGAAAACATGGATGACACAGCAAGTGCTGCTAAGTTTATAGCCACCAATAATTACAGAGATACAGGAGCTGTTGCAAGTGCTCGAGCTGCAGAGATTTATGGCCTTGATATTCTTTTAAATGGGATCCAGGATGATTTTTACAATGTTACTCGCTTCTTGATGTTAGCCAGGGATCCAATAATGCCACGAACTGACAGACCTTTCAAGACAAGCATTGTATTCACTGTTGACGACAGACCTGGGGCGGTTTTCAAGGCACTTGCTGTATTTGCTTTTAGAAATATCAATTTAACCAAGCAGATTGAAGGTAGACCCCAGAGAAAGCGGCCATTGAGGGTGGTTGATGATAGGAACAGTGGGACTGCAAAATACTTTGACTATCTCTTCTATGTTGACTTTGAAGCCTCTATGGCTGATCT

Fln Alignment:

sp_v1.1_unigene37202___TIPAAYYFSSGPLSLTDLAPSSCHGSQVRVAYQGVPGAYSEVAALKAYPQCEAVPCEQFEAAFQAVELWTVDRAVLPIENSLVGSIHRNYDLLLSHNLHIVGEVQLPVQHCLLGRLRCEETNIRRVVSHPQALAQCEKALSELGVALENMDDTASAAKFIATNNYRDTGAVASARAAEIYGLDILLNGIQDDFYNVTRFLMLARDPIMPRTDRPFKTSIVFTVDDRPGAVFKALAVFAFRNINLTKQIEGRPQRKRPLRVVDDRNSGTAKYFDYLFYVDFEASMAD
B8LQ85_______________TVPKDLVSLPRPLSVTDLATPPSHGSQVRVAYQGVPGAYSEAAALKAYPQCEAVPCEQFEAAFQAVELWLVDKAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVQLAVHHCLLGLPGVKKEELKRVVSHPQALSQCEHTLSTLGVIREAADDTAGAAQFIAANNLRDTGAVASARAAEIYGLQILADGIQDDSDNVTRFLMLAREPIIPRIDRPFKTSIVFTLEEGPGVLFKALAVFALRDINLTK-IESRPQRKRPLRVVDDSNTGAAKYFDYLFYIDFEASMAD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
692	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain