SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37150

Length: 1614 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene37150

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Porin n=4 Tax=Picea RepID=O24244_PICAB	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	probable plasma membrane intrinsic protein 1c	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	93%
Blast2go	water transport	GO:0006833	Biological Process	93%
Blast2go	response to salt stress	GO:0009651	Biological Process	93%
Blast2go	water channel activity	GO:0015250	Molecular Function	93%
Blast2go	vacuole	GO:0005773	Cellular Component	93%
Blast2go	plasma membrane	GO:0005886	Cellular Component	93%
Blast2go	chloroplast	GO:0009507	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Blast2go	Major intrinsic protein	IPR000425	-	93%
Blast2go	Major intrinsic protein, conserved site	IPR022357	-	93%
Blast2go	Aquaporin-like	IPR023271	-	93%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNZ4

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 56 aas, putative chimeric sequence, your sequence is shorter than subject: 233 - 288

Fln protein: MEGKEEDVKLGANKYSERQPLGTAAQTREKDYKEPGPAPLFEPGELASWSFWRAGIAEFMATFLFLYITILTVMGVKRADNVCTGSVGIQGIAWAFGGMIFCLVYCTAGISGGHINPAVTFGLFLARKLSLPRAVFYMICQCLGAICGAGVVKGFMEGEYQADGGGANSVAHGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPLLAPLPIGFAVFLVHLATIPLK*

Protein Length: 234

Fln nts: CAACGTCGTGACATGGGGAACACACATTCATTCATTCTGCATTTGCTGCTCTGCACAATTTTGGCTTTGTTTCGACTGAGTTCAGACAGTCTCAGAATCCTCTGGTTCTCTGTGTTGAA_-_ATGGAAGGAAAAGAAGAAGACGTTAAGCTAGGGGCGAACAAGTATTCCGAGAGGCAGCCGCTGGGGACTGCGGCACAGACGAGGGAAAAGGATTACAAGGAGCCTGGTCCCGCGCCACTGTTCGAACCCGGGGAGTTAGCGTCATGGTCCTTCTGGAGGGCGGGTATTGCAGAGTTCATGGCGACTTTCTTGTTTCTTTACATCACGATCCTCACGGTCATGGGTGTCAAGAGGGCCGACAATGTTTGCACTGGATCTGTTGGAATTCAGGGGATTGCATGGGCCTTTGGGGGAATGATCTTCTGTCTCGTCTATTGTACAGCCGGTATTTCAGGTGGTCACATTAATCCAGCAGTGACCTTTGGGCTGTTCTTGGCCAGAAAGCTGTCTCTGCCCCGGGCTGTGTTCTACATGATATGTCAGTGCTTGGGAGCCATCTGTGGCGCTGGTGTTGTGAAGGGCTTCATGGAAGGCGAATATCAAGCGGACGGTGGAGGTGCTAACTCTGTGGCTCATGGCTACACCAAGGGAGATGGCTTGGGTGCTGAGATTGTGGGAACCTTCGTTCTGGTCTATACCGTTTTCTCTGCTACCGATGCCAAGCGAAGCGCCCGGGATTCTCACGTTCCTCTGCTAGCACCACTTCCAATAGGGTTTGCAGTTTTTCTGGTTCACCTTGCCACAATTCCTTTAAAATAA___GCAAAGATTTACTCTATTACTTGCCCTTTATATGCACAGTTGGATATCTGTGTAAACATGTCAGCACCTATGACTGTATTTCTTGTCCTGCATATGCACAGTTGGATATCTGTGTAAACATGTCAGCACCTATGTAAAGAGAGAAGACGCTATACTAGATCAGCTTACAGTGATACTTATTTAAGTGTTTTTCTTAGGCTAGAAACTATTGCAATAAACTCTTACCACATCATAGCTTGTCTTGAAAGCTCAACATGTCAGTAGGCATGGGGTTTGGGAATAGGTAAGAAACCTGCCTTTCTCCGCTGGGCTTGAATGCAAGAGAGTTGGTTCAAGCCTATACTCTATGATACATTAAAGCTAAAACTTGTCTTGAAGATTAACAGGTCAGTTGGGGAATTTGGGGATTTGGGATTTGAACTTAGGTGAGTCGGATACCCATTATTCTGTCAAACTACCTGAGATAATTCTGATTAAGACACTGTAATAATGTATATACTCAAGTGTTACAGTAAATATTAAGTGTTGCAGATTTAGTTTCTAAATAGATGATCTACATGTAGTTAGAGTGTGTAGCTTAATTGTCTATTACTTTGTTATAAAGTAATATGTAAAACTTGAAATTCAAAGTTCAAATCTTAATTGGTTAAAGAAAATGGATGATCAATATTTATAGTTTATATTGTTTGGATATATACAGATATTCATCGAAAAATCTGTCTTTCGGGTTAAACCAGAATAAATGCTTTGCCGCTCTGGTACATATAGACCATAAGCATCTAAACTGACTTTTCAA

Fln Alignment:

sp_v1.1_unigene37150___MEGKEEDVKLGANKYSERQPLGTAAQTREKDYKEPGPAPLFEPGELASWSFWRAGIAEFMATFLFLYITILTVMGVKRADNVCTGSVGIQGIAWAFGGMIFCLVYCTAGISGGHINPAVTFGLFLARKLSLPRAVFYMICQCLGAICGAGVVKGFMEGEYQADGGGANSVAHGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPLLAPLPIGFAVFLVHLATIPL
A9NNZ4_______________MEGKEEDVKLGANKYSERQPLGTAAQTREKDYKEPGPAPLFEPGELASWSFWRAGIAEFMATFLFLYITILTVMGVKRSDDVCTGSVGIQGIAWAFGGMIFCLVYCTAGISGGHINPAVTFGLFLARKLSLPRAVFYMICQCLGAICGAGVVKGFMESEYEMDGGGANSVAHGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPLLAPLPIGFAVFLVHLATIPI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1211			25	75	0.996473
1462		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain