SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37128

Length: 865 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene37128 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM40_MARPO	-	-	8.00001e-42	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	nodulation receptor kinase	-	-	1.43787e-41	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	1.43787e-41	63%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	1.43787e-41	63%
Blast2go	Protein kinase-like domain	IPR011009	-	1.43787e-41	63%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	1.43787e-41	63%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	1.43787e-41	63%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
710	83		16		0.994512
716	83	16			0.994512
720	83			16	0.994512
751	16		83		0.994512
829		50		50	1.0
833	33		66		0.997452
834		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain