SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37081

Length: 725 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene37081 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	-	-	2.0e-19	36%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	40%
Blast2go	glycosyl hydrolase family 10 protein	-	-	1.19653e-20	58%

Source	ECs	Term	Type	e value	Identity
Blast2go	Endo-1,4-beta-xylanase.	EC:3.2.1.8	-	1.19653e-20	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	endo-1,4-beta-xylanase activity	GO:0031176	Molecular Function	1.19653e-20	58%
Blast2go	cell wall	GO:0005618	Cellular Component	1.19653e-20	58%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
527		71		28	1.0
533	28			71	1.0
539		14		85	0.993533
540		14		85	0.993533
542	85	14			0.993533
544		85		14	0.993533
554		33		66	1.0
575		33		66	1.0
577		66		33	1.0
600	83	16			0.994512
612	66			33	1.0
632			75	25	0.996473
633	25		75		0.996473
652	66			33	0.997471
672	66		33		0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain