SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene37055

Length: 399 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene37055
TATATTGGAAAAGCCTGAGAGTATTGACGAAGGATCTGGCAACAGGTTTTTGCTTTTCTCATCGGGAGGCTCAAAAGACCCTATGTCCTGCCAACTCAAAATTACTAAAAACATTGGACTTAACGATTTTGAGCTGCTTAGGGTGGTTGGACAAGGTGCATTTCGTAAGGTGTTCCAGGTTAAAAGAATTGGAACATCGGAGATTTATGCTATGAAAGTTATGAGGAAAGACAGAATTATGGAAAAGAATCACGCGGAATACATAAAAGCTGAAAGAGACATTATGACAAGGATTGAGCATGCCTTTATTGTTCAGCTCAGATACTCCTTCCAGAGTGTGCATATTGAGTTTCTGGCGTTGAGCGTGGATATCTCAGCATTAGGTATGAATGCTGCCTA

Ace file of the UniGene sp_v1.1_unigene37055

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein S6 kinase, putative (EC:2.7.11.13); K04688 p70 ribosomal S6 kinase [EC:2.7.11.1]	-	-	9.0e-28	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	ribosomal protein s6	-	-	4.26861e-28	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	4.26861e-28	84%

Source	ECs	Term	Type	e value	Identity
AutoFact	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	9.0e-28	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	4.26861e-28	84%
Blast2go	response to cold	GO:0009409	Biological Process	4.26861e-28	84%
Blast2go	response to heat	GO:0009408	Biological Process	4.26861e-28	84%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	4.26861e-28	84%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	4.26861e-28	84%
Blast2go	protein binding	GO:0005515	Molecular Function	4.26861e-28	84%
Blast2go	cytoplasm	GO:0005737	Cellular Component	4.26861e-28	84%
Blast2go	nucleus	GO:0005634	Cellular Component	4.26861e-28	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	4.26861e-28	84%
Blast2go	Protein kinase-like domain	IPR011009	-	4.26861e-28	84%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	4.26861e-28	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL96

Fln msg: Distance to subject end: 255 aas, your sequence is shorter than subject: 132 - 407

Fln protein: ILEKPESIDEGSGNRFLLFSSGGSKDPMSCQLKITKNIGLNDFELLRVVGQGAFRKVFQVKRIGTSEIYAMKVMRKDRIMEKNHAEYIKAERDIMTRIEHAFIVQLRYSFQSVHIEFLALSVDISALGMNAA

Protein Length: 133

Fln nts: TATATTGGAAAAGCCTGAGAGTATTGACGAAGGATCTGGCAACAGGTTTTTGCTTTTCTCATCGGGAGGCTCAAAAGACCCTATGTCCTGCCAACTCAAAATTACTAAAAACATTGGACTTAACGATTTTGAGCTGCTTAGGGTGGTTGGACAAGGTGCATTTCGTAAGGTGTTCCAGGTTAAAAGAATTGGAACATCGGAGATTTATGCTATGAAAGTTATGAGGAAAGACAGAATTATGGAAAAGAATCACGCGGAATACATAAAAGCTGAAAGAGACATTATGACAAGGATTGAGCATGCCTTTATTGTTCAGCTCAGATACTCCTTCCAGAGTGTGCATATTGAGTTTCTGGCGTTGAGCGTGGATATCTCAGCATTAGGTATGAATGCTGCCTA

Fln Alignment:

sp_v1.1_unigene37055___LNDFELLRVVGQGAFRKVFQVKRIGTSEIYAMKVMRKDRIMEKNHAEYIKAERDIMTRIEHAFIVQLRYSFQSVHIEFLAL
B8LL96_______________IEDFECEKLHGVGSYSRVVRAKKKDTGKIYALKIMDKRFIAKEKKTTYVKLERIVLDQLDHPGIIKLYFTFQDASNIYLGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain