SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36998

Length: 1882 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene36998

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Trytophan synthase alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9S4R8_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	tryptophan synthase alpha chain	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:4.2.1.2-	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	83%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	83%
Blast2go	defense response to fungus	GO:0050832	Biological Process	83%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	83%
Blast2go	tryptophan synthase activity	GO:0004834	Molecular Function	83%
Blast2go	protein binding	GO:0005515	Molecular Function	83%
Blast2go	peroxisome	GO:0005777	Cellular Component	83%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	83%
Blast2go	vacuole	GO:0005773	Cellular Component	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABD1

Fln msg:

Fln protein: MANQSILFSSPTPLCIGQKWSLPTTRLACLVSSMNAFSKKLVAKNSHYLQLGMDMDVFHTKVIKTRAVRAIAAGEIASVVESPSISETFANLKKRGKVALVPYITAGDPDLLTTAKALEVLDSCGADIIELGVPYSDPLADGPVIQAAATRALQKGTNFDAVISMLREVIPQLKAPLVLFSYYNPILKHGPESFMHTIKSVGVRGLVVPDVPLEETTNLRRLTAANKIELVLLTTPTTPTERMKLIVEASEGFIYLVSITGVTGARASIESRVEFLLQEIKKATTKPVAVGFGISKPEHVAQIAQWGADGVIVGSAMVKLLGEAKSPEEGLEHLETLTRNLRAAIP*

Protein Length: 348

Fln nts: ATGGGGATGACTTTTTCATTTACCATTTGGACTCCAAACCAGACCTGAGAGCGTAAACTAGCAGATGTCAAAACTATATTGTTGATAGTTCAGAACAATTTGGATTTTTAATGGATGGCATTCAAAATCCGACTTAAGTCACATTAGACACTTTAGACGCCATGTCTGTTTAAAATTTCACCAGCGAAATCTTCAATGCTGATTTCGTCGTGACCTTGGCTGTCACTCAACATATCCTGCTTTGTCGCTGGAGCAGATGTGAAATCTTGTTTTTCAAAACGTGGTAAACTTTCTATTTTGGGGCTCAAAGTACACCATATACATCGATTTGATTTTACTGATCAAAAGAAACACAGCAGAGCCTTTGTGCTTTCTTTTTTCAGAGTTCTGTGCATGCAAGA_-_ATGGCGAACCAGAGCATTTTGTTTTCATCGCCAACTCCTCTGTGTATCGGACAAAAATGGTCTTTACCGACAACCAGATTGGCGTGTTTGGTCAGCTCTATGAATGCATTCtCCAAAAAACTGGTTGCTAAAAATAGCCATTATCTGCAACTGGGAATGGATATGGACGTGTTTCACACCAAAGTTATCAAGACCAGAGCAGTTAGAGCGAtTGCAGCTGGAGAAATCGCGAGTGTTGTGGAATCCCCCAGCATTTCTGAAACGTTCGCCAATCTTAAGAAGCGTGGAAAGGTAGCTCTCGTGCCTTACATAACTGCAGGGGATCCTGATCTATTAACTACAGCCAAAGCACTCGAAGTGCTGGATTCATGCGGGGCTGATATAATAGAGCTGGGAGTGCCATACTCTGATCCTCTAGCTGATGGGCCAGTCATACAGGCAGCTGCGACAAGAGCTCTACAAAAGGGTACAAACTTTGATGCAGTTATTTCTATGCTTAGAGAGGTGATTCCACAATTGAAAGCTCCACTTGTGTTGTTTTCTTACTACAATCCAATCTTAAAGCATGGCCCAGAAAGCTTCATGCATACCATCAAATCAGTAGGGGTTCGTGGTCTTGTTGTCCCAGATGTTCCATTGGAAGAGACAACAAATCTGAGAAGGCTAACAGCTGCAAATAAAATAGAACTTGTACTCCTCACAACTCCAACTACTCCAACAGAACGGATGAAATTGATTGTTGAAGCTTCAGAAGGCTTTATATATCTTGTGAGCATAACTGGTGTGACTGGTGCCCGTGCTTCAATAGAATCACGTGTTGAGTTTCTTCTTCAAGAAATTAAAAAGGCTACAACTAAACCAGTGGCTGTTGGATTTGGTATATCCAAGCCAGAGCACGTGGCTCAGATTGCACAATGGGGAGCAGATGGAGTGATTGTGGGCAGTGCAATGGTGAAGTTGCTTGGAGAAGCAAAGTCACCGGAAGAAGGACTTGAGCATCTTGAGACCCTTACTCGAAATCTTAGGGCTGCAATTCCTTAG___TCAATTGTATGGCAAGAATATGTTTCCTAGATTCCTGGGATGCTTGCTATTTCTGAAATGCCTCCCATCTTATTGAATGTTTACCCTCCACATTCGAGCACTATGTTTATAAGATGTTGGACTGGTGTTGTCAATACGAACAAGAAAGTAGGTGGTTGAACTTGACACTCTTTTCGTTCTTGCTTTCAGGGAGATTTTGTGGTCTCTCTGTGATTAATTTGTCCTCCTTTAATGTAAAAATGTGTTGGCCTAATTTTGTCATGCTAGCTGAGTGTGTTTAGCAGTCTGCCTAAAGAGTTTTATGATACAAACGACAGCTTACTCTGATATCCTGATTGACATCATGTTTCTCAGTAAAGCATTGGATTTGATAGCAATATTCTCTAGTGATTCGGTGATCTGCATTTAATACAGAGTTCTGTTATGATTTACGGATCGAC

Fln Alignment:

sp_v1.1_unigene36998___MANQSILFSSPTPLCIGQKWSLPTTRLACLVSSMNAFSKKLVAKNSHYLQLGMDMDVFHTKVIKTRAVRAIAAGEIASVVESPSISETFANLKKRGKVALVPYITAGDPDLLTTAKALEVLDSCGADIIELGVPYSDPLADGPVIQAAATRALQKGTNFDAVISMLREVIPQLKAPLVLFSYYNPILKHGPESFMHTIKSVGVRGLVVPDVPLEETTNLRRLTAANKIELVXXXXXXXXXERMKLIVEASEGFIYLVSITGVTGARASIESRVEFLLQEIKKATTKPVAVGFGISKPEHVAQIAQWGADGVIVGSAMVKLLGEAKSPEEGLEHLETLTRNLRAAIP*SI
D5ABD1_______________MANQSILFSLPTPLCFGQKWSLPTTRLAYLVSSVNAFPKKLVTNNSHSLRLGMDMDVFHTKVIKTRTARAIAAGEIASGVESPSISETFANLKKRGKVALVPYITAGDPDLLTTAKALKVLDSCGADIIELGVPYSDPLADGPVIQAAATRALQKGANFDAVISMLREVIPQLKAPLVLFSYYNPILKRGPESFMDTIKSVGVRGLVVPDVPLEETKNLRRLTAANKIELVLLTTPTTPTERMKLIVEASEGFIYLVSITGVTGARATIESRVELLLREIKKATTKPVAVGFGISKPEHVAQIAQWGADGAIVGSAMVKLLAEAKSPEEGLKNLETLTRSLKAAIPWSI

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
516		33		66	1.0
532		66	33		0.997452
565	66		33		0.997452
573		33	66		0.997452
575			66	33	0.997452
588	33		66		0.997452
795	12		87		0.992554
823	11		88		0.991528
1354	90	10			0.90298
1355	90		10		0.90298
1357		10	90		0.90298
1362	90	10			0.90298
1363		10	90		0.90298
1367		90	10		0.90298
1368		10		90	0.90298
1372	90			10	0.90298
1373		10	90		0.90298
1375	90	10			0.90298
1376			90	10	0.90298
1424	77		11		0.968132
1488	83			16	0.994512
1513		83		16	0.994523
1514		83	16		0.994523
1515		83	16		0.994523
1516	80	20			0.995493
1518		80	20		0.995493
1520		20		80	0.995493
1522		20		80	0.995493
1524		20	80		0.995493
1622		25		75	0.996474
1640		66		33	0.997456
1675	50			50	1.0
1721	20	80			0.995498
1724	80		20		0.995497
1754		40		60	1.0
1768		60	40		1.0
1817	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain