SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36995

Length: 469 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene36995
ATGGGACGCACATAGTAATTTAGCGGTGGGTCGCGCCATTTTCATCATCCAAATATTGTGATAGTCGCTTATTTGCAAAGTCTAATGAGTTCCCTTCGGTATTAAGTTCCTGCAATTGGTTAACTTCTGATTATTCAGAATAATGTTAGTTTCTGCGAGTCCCCTCCTTGGTGCATTTTCTCGTTATTGGTGATTCTGGGCAGGCATTTAAGTAGGTTGAGAGCGGTCTGAAGAGACAACAGGTCTCTGTCCATGGCATCAATGGATGAGCTTTACAGAGAAAGAATGACAAAGTTTTGCGCGCATTTTGGTTAGCCAGATATTTCAAAATGACAACACGCCATGTGAAATTGAACCGGGACTATTTCTTGGTTCTGTTGGAGCAGCCTCAAATAAAGCTGTACTAAAGAGTTTGAATATCACTCATGTTCTGTTGTAGCAAATGCATTGGTGCCTGCTTATCCAAGGG

Ace file of the UniGene sp_v1.1_unigene36995

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dual specificity protein phosphatase, putative (EC:3.1.3.16); K14165 dual specificity phosphatase [EC:3.1.3.16 3.1.3.48]	-	-	5.0e-08	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%

Source	ECs	Term	Type	e value	Identity
AutoFact	Phosphoprotein phosphatase.	EC:3.1.3.16	-	5.0e-08	65%
AutoFact	Protein-tyrosine-phosphatase.	EC:3.1.3.48	-	5.0e-08	65%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7T6

Fln msg: Overlapping hits, possible frame ERROR between 436 and 433, Distance to subject end: 104 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 60 - 169

Fln protein: QSFARILVSQIFQNDNTPCEIEPGLFLGSVGAASNKAVLKSLNITHVxxxANALVPAYPR

Protein Length: 61

Fln nts: ATGGGACGCACATAGTAATTTAGCGGTGGGTCGCGCCATTTTCATCATCCAAATATTGTGATAGTCGCTTATTTGCAAAGTCTAATGAGTTCCCTTCGGTATTAAGTTCCTGCAATTGGTTAACTTCTGATTATTCAGAATAATGTTAGTTTCTGCGAGTCCCCTCCTTGGTGCATTTTCTCGTTATTGGTGATTCTGGGCAGGCATTTAAGTAGGTTGAGAGCGGTCTGAAGAGACAACAGGTCTCTGTCCATGGCATCAATGGATGAGCTTTACAGAGAAAGA_-_ATGACAAAGTTTTGCGCGCATTTTGGTTAGCCAGATATTTCAAAATGACAACACGCCATGTGAAATTGAACCGGGACTATTTCTTGGTTCTGTTGGAGCAGCCTCAAATAAAGCTGTACTAAAGAGTTTGAATATCACTCATGTTxxxxxxxxxGCAAATGCATTGGTGCCTGCTTATCCAAGGG

Fln Alignment:

sp_v1.1_unigene36995___CEIEPGLFLGSVGAASNKAVLKSLNITHVLxVANALVPAYPR
D5A7T6_______________CNCFKGLFLGSVGAASNKGVLKSLNITHVLxVANALVPAYPR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
127	75		25		0.99649
187	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain