SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36983

Length: 1301 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene36983

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cation-transporting atpase 13a1, putative n=1 Tax=Ricinus communis RepID=B9RHM6_RICCO	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	at5g23630-like protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	87%
Blast2go	stem cell fate determination	GO:0048867	Biological Process	87%
Blast2go	pollen germination	GO:0009846	Biological Process	87%
Blast2go	pollen maturation	GO:0010152	Biological Process	87%
Blast2go	meristem maintenance	GO:0010073	Biological Process	87%
Blast2go	cellular metal ion homeostasis	GO:0006875	Biological Process	87%
Blast2go	cation-transporting ATPase activity	GO:0019829	Molecular Function	87%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRY8

Fln msg: warning!, putative chimeric sequence! or repetitive structure your sequence is shorter than subject: 260 - 629

Fln protein: GLTDACLAVRPTTDIIRQGRSTLVTTLQMFKILGLNCISPSFTPxxxxxxxxxxxxLGDMQATISGIFYCSIFLVHFSCSSSEHTFSPASTSQHFLCLCVIFSSGAVCNSHNISYLFR*RSRKVYARRVY*T*FGVSSKLS*YSLVHGQYDDTSSHVCCKLHGPSFQPKYQGE*TFCYALTAAVLFFTAITSDMFRSLNDWLRLVPLPQPFGSKLLLWAMLMMISCFIWEHSLRWFFPGRMPSWKRRQRQISSSQKKNI*

Protein Length: 261

Fln nts: GGCCTTACTGATGCATGCTTAGCAGTGAGGCCGACAACAGATATTATTCGGCAGGGACGTAGCACACTTGTTACAACTTTACAGATGTTCAAGATACTGGGATTAAATTGCATATCACCTAGCTTTACTCCATCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTAGGCGATATGCAAGCCACCATCAGTGGCATTTTTTACTGCAGCATTTTTCTTGTTCATTTCTCATGCTCGTCCTCTGAACACACTTTCAGCCCAGCGTCCACATCCCAACATTTTTTGTGCTTATGTGTTATTTTCAGTTCTGGGGCAGTTTGCAATTCACATAACATTTCTTATCTCTTCCGTTAAAGAAGCAGAAAAGTATATGCCAGAAGAGTGTATTGAACCTGATTCGGAGTTTCATCCAAACTTAGTTAATACAGTCTCGTACATGGCCAATATGATGATACAAGTAGCCACGTTTGCTGTAAATTACATGGGCCATCCTTTCAACCAAAGTATCAAGGAGAATAAACCTTTTGCTATGCGTTGACAGCTGCTGTTCTGTTTTTTACTGCTATCACCTCAGACATGTTCCGAAGCTTGAATGATTGGCTAAGGTTAGTTCCTCTCCCACAGCCCTTTGGAAGTAAGCTGCTTCTTTGGGCCATGCTTATGATGATTAGTTGCTTTATTTGGGAGCATAGTCTGCGATGGTTTTTCCCGGGTAGGATGCCTTCATGGAAGCGGAGGCAACGCCAAATATCTTCTAGTCAGAAGAAAAATATCTAATTGTTGCTGTTACTCTTTCGTAGTTACAGAATTCATAGTCCGGTGTAACATTTGATTTTGAGGTCCCTTTTGACCTACATATTCAAAATTTTCTTGGGAGGATTTTTATTATAAACAGATGGCTAGTGTATTTTTACTTCATAATTTGAAAGGGCCTTGCTTGGCTATTTTTTCCGAAGAGAGAAACTCCTCATCCACAGTTTCTTCTCATTATAGTCAAGTTTCAAATGCCTGATTGTTAGAGTCCCATTGTTTTCAAGGCAAAAGAATGCTGCAAGTTTCTGGTTACTGCCATTATATTGTCCATTACTTGGGCCACGTTGGAAAAGATTTTGAAGGAAATGAAATCAATGTTTCTTGGATAATTGTGAGAATGATCTTAACTTGTTATGAGGAGTGATACGACTCTATTGGCCCCCCTTGAAGTGGCATGTACCCTTATTCACCTGTCTTTATTTTTTATGTTTCTGAACCTTTTAAGACGAATTATATATTTTGTTTCTGAACCTTTTAAGATGAAGTT

Fln Alignment:

sp_v1.1_unigene36983___AVRPTTDIIRQGRSTLVTTLQMFKILGLNCISPSFTPSxxxxxxxxxxxLGDMQATISGIFYCSIFLVHFSCSSSEHTFSPASTSQHFLCLCVIFSSGAVCNSHNISYLFR*RSRKVYARRVY*T*FGVSSKLS*YSLVHGQYDDTSSHVCCKL----------HGPSFQPKYQGE*TFCYALTAAVLFFTAITSDMFRSLNDWLRLVPLPQPFGSKLLLWAMLMMISCFIWEHSLRWFFPGRMPSWKRRQRQISSSQKKNI
B8LRY8_______________SVRPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSxxxxxxxxxxxLGDMQATISGIFTAAFFLF-ISHARPLNTLSTQRPHPNIFCAYVLFS---VLGQFAIHITFLISSVKEAEK------YMPEECIEPDSEFHPNLVNTVSYMANMMIQVATFAVNYMGHPFNQSIKENKPFCYALTAAVLFFTAITSDMFRSLNDWLKLVPLPQPFGSKLLLWAMLMMTSCFIWEHLLRWVFPGRMPSWKRKQRRISSSQKKNI

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
219		50		50	1.0
220	50			50	1.0
222		20		80	0.995493
224		20		80	0.995493
348		20		80	0.999996
480		10		90	0.90298
684		16		83	0.994512
707	85	14			0.993533
714		14	85		0.993533
715	85			14	0.993533
717		12	87		0.992554
719		12		87	0.992554
720		12		87	0.992554
721			25	75	1.0
723		12	12	75	0.975346
725		87		12	0.992554
726		87		12	0.992554
727	12		75	12	0.975346
730		12		87	0.992554
731	87			12	0.992554
733			87	12	0.992554
735		12		87	0.992554
736			87	12	0.992554
738	12	87			0.992554
751			88	11	0.991528
752	88	11			0.991528
754			88	11	0.991528
755		88	11		0.991528
757	88	11			0.991528
759			88	11	0.991528
760		88		11	0.991528
761		88	11		0.991528
762	88	11			0.991528
763	88			11	0.991528
764	88		11		0.991528
787		10		89	0.999919
788	89		10		0.999919
792	89		10		0.999919
794		10		89	0.999919
795		10		89	0.999919
796			89	10	0.999919
798		4	8	87	0.999414
804		8	4	87	0.999414
1109		11	88		0.923569
1111		88		11	0.923566

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain