SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36970

Length: 1435 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene36970 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDP-mannose pyrophosphorylase n=4 Tax=Pinaceae RepID=A6N835_PINTA	-	-	98%
FL-Next	tr=GDP-mannose pyrophosphorylase; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	gdp-mannose pyrophosphorylase	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mannose-1-phosphate guanylyltransferase.	EC:2.7.7.13	-	0.0	94%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	94%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	94%
Blast2go	Metabolic pathways	01100	94%
Blast2go	Biosynthesis of secondary metabolites	01110	94%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	94%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	94%
Blast2go	response to ammonium ion	GO:0060359	Biological Process	94%
Blast2go	response to ozone	GO:0010193	Biological Process	94%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	94%
Blast2go	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	94%
Blast2go	response to heat	GO:0009408	Biological Process	94%
Blast2go	response to salt stress	GO:0009651	Biological Process	94%
Blast2go	mannose-1-phosphate guanylyltransferase activity	GO:0004475	Molecular Function	94%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A6N835

Fln msg: Unexpected stop codon in the beginning of your sequence,

Fln protein: Q*ANDLHQIEALKAIGVDEVVLAINYQPEVMLSFLKAFETKLGIKITCSQETEPMGTAGPLALARDKLIDGSGEPFFVLNSDVISEYPLKQMVDFHTKHGGEASIMVTKVDEPSKYGVVILDEETGKVERFVEKPKVFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPKIAQEKQLYAMVLPGFWMDIGQPRDYISGLRLYLDSLRRNTSDKLATGVNIVGNVIVDSTAQIGEGCLIGPDVAIGPGCAIEAGVRLSRCTIMRGVRIKKHACVSGSIIGWHSTVGQWARVENMTILGEDVHVSDEVYSNGGVVLPHKEITSRHSLAQKLSCDWKDGGGLVANWLL*

Protein Length: 349

Fln nts: CAATAAGCCAATGATTTGCATCAGATTGAAGCACTTAAAGCTATTGGTGTCGATGAAGTTGTGCTAGCTATTAACTATCAGCCTGAGGTTATGCTGAGCTTCTTAAAGGCTTTTGAAACGAAACTTGGGATTAAGATTACCTGTTCTCAGGAAACAGAGCCCATGGGCACTGCTGGGCCTTTAGCTCTTGCAAGGGACAAACTGATCGACGGATCTGGGGAACCATTTTTTGTTCTCAACAGTGATGTCATCAGTGAATACCCATTAAAGCAAATGGTTGATTTCCATACAAAACATGGAGGAGAGGCATCCATTATGGTGACCAAGGTTGATGAACCTTCAAAGTATGGTGTTGTTATTCTTGACGAGGAGACTGGAAAGGTAGAGAGGTTCGTTGAGAAGCCCAAGGTCTTTGTCGGTAACAAGATCAATGCAGGAATCTACCTTCTGAACCCCAGTGTTTTGGACCGAATTGAGCTGAAACCCACATCCATTGAAAAAGAAGTGTTCCCAAAAATTGCACAAGAGAAACAGCTCTATGCTATGGTTTTACCTGGTTTCTGGATGGATATTGGGCAACCCAGAGACTATATTTCAGGCCTAAGGCTCTACTTAGATTCTCTTCGAAGAAACACCTCGGATAAATTAGCAACTGGGGTTAACATTGTTGGAAATGTGATAGTTGACAGCACTGCACAGATTGGTGAGGGTTGCCTGATTGGGCCAGATGTGGCCATTGGCCCAGGTTGTGCGATTGAGGCAGGAGTAAGACTGTCACGGTGCACTATTATGCGTGGAGTGCGCATCAAGAAACACGCTTGTGTGTCTGGAAGTATCATTGGTTGGCATTCTACTGTTGGCCAATGGGCTCGCGTTGAAAACATGACAATATTGGGGGAGGATGTCCATGTTTCTGATGAGGTATACAGCAATGGAGGTGTGGTCCTTCCTCATAAAGAAATCAcgTCgaGACaTTctCtagCACagAAATTGTCATGTGATTGGAAAGATGGAGGCGGCCTGGTAGCTAATTGGTTATTGTAA___TATTAATGATACAGGTGGCATAATCGTTTATGTTGTTTTGGGGGAGTTCAGGGGGTGTAGATTGTATTCTATTTCTCTTTTTGGAGGTTTGGGGAGGAATGGAAAGTTGAGGCTGACTAAAAAGCCTTGAGTTTTTGTTTAGGCTTGCATTTTATGCTATAAGATGGCAGTGAGGGAAGATAGTTCAGCGTATTAGTAGAGTAAATTAGTCAGTAATAGTTTGCACTATACATTATAATTTATATATTTGTATGTGGTCCTCATCCATAGTTATTCAATATGTAATGATTTTACGTTGGTATTCACATGTTCATTTTGTTATTTGACATTGAGAGTTCCAACGCTAAGAAAAATTGATATTTATATATGTGGTATTTGACCATAATATTGT

Fln Alignment:

sp_v1.1_unigene36970___LHQIEALKAIGVDEVVLAINYQPEVMLSFLKAFETKLGIKITCSQETEPMGTAGPLALARDKLIDGSGEPFFVLNSDVISEYPLKQMVDFHTKHGGEASIMVTKVDEPSKYGVVILDEETGKVERFVEKPKVFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPKIAQEKQLYAMVLPGFWMDIGQPRDYISGLRLYLDSLRRNTSDKLATGVNIVGNVIVDSTAQIGEGCLIGPDVAIGPGCAIEAGVRLSRCTIMRGVRIKKHACVSGSIIGWHSTVGQWARVENMTILGEDVHVSDEVYSNGGVVLPHKEITS
A6N835_______________LHQIEALKAIGVDEVVLAINYQPEVMLSFLKAFETKLGIKITCSQETEPMGTAGPLALARDKLIDGSGEPFFVLNSDVISEYPLKQMVDFHTKHGGEASIMVTKVDEPSKYGVVILDEETGKVEKFVEKPKVFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPKIAQEKQLYAMVLPGFWMDIGQPRDYISGLRLYLDSLRRNTSDKLATGVNIVGNVIVDSTAQIGEGCLIGPDVAIGPGCVIEAGVRLSRCTIMRGVRIKKHACVSGSIIGWHSTVGQWARVENMTILGEDVHVSDEVYTNGGVVLPHKEIKS

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
450		33	66		1.0
451	33			66	1.0
455	33	66			1.0
456		33		66	1.0
457	33			66	1.0
459	33	66			1.0
460		33	66		1.0
463			33	66	1.0
467	33			66	1.0
468		33	66		1.0
471		33		66	1.0
472			33	66	1.0
772	25	75			0.996474
782	25	75			0.99649
922	33			66	0.997452
991	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain