SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36915

Length: 318 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene36915
CCGGGCAATTGGTGTGGAGGTAATCGAGGAGATTGTTGTCCTAAGGCAAGGGCGATGGAGATTAATGATGCACCAGAAGGAGGGGGGCGACAGCGGCAGGAGGAGAGGGAAATGCCTGAAAGCTTCAGAGCTCTGCCTTCTGCAATATCAAATGAGGAGGAGGAAGGGGATGTTTGCAGGATATGCAGGAACAGTGGGGACCGGGACAATCCCTTGCATTACCCATGTGCTTGCAGTGGGAGCATCAAGTATGTGCACCAGGATTGCCTTCTTCAGTGGCTTAATCACAGCAATGCACGCCAGTGTGAGGTGTGCAAA

Ace file of the UniGene sp_v1.1_unigene36915

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein binding / zinc ion binding; K10661 E3 ubiquitin-protein ligase MARCH6 [EC:6.3.2.19]	-	-	7.0e-25	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	protein	-	-	5.22303e-26	87%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	7.0e-25	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-CH-type	IPR011016	-	5.22303e-26	87%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	5.22303e-26	87%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	5.22303e-26	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQD2

Fln msg: Distance to subject end: 158 aas, your sequence is shorter than subject: 106 - 279

Fln protein: PGNWCGGNRGDCCPKARAMEINDAPEGGGRQRQEEREMPESFRALPSAISNEEEEGDVCRICRNSGDRDNPLHYPCACSGSIKYVHQDCLLQWLNHSNARQCEVCK

Protein Length: 107

Fln nts: CCGGGCAATTGGTGTGGAGGTAATCGAGGAGATTGTTGTCCTAAGGCAAGGGCGATGGAGATTAATGATGCACCAGAAGGAGGGGGGCGACAGCGGCAGGAGGAGAGGGAAATGCCTGAAAGCTTCAGAGCTCTGCCTTCTGCAATATCAAATGAGGAGGAGGAAGGGGATGTTTGCAGGATATGCAGGAACAGTGGGGACCGGGACAATCCCTTGCATTACCCATGTGCTTGCAGTGGGAGCATCAAGTATGTGCACCAGGATTGCCTTCTTCAGTGGCTTAATCACAGCAATGCACGCCAGTGTGAGGTGTGCAAA

Fln Alignment:

sp_v1.1_unigene36915___CRICRNSGDRDNPLHYPCACSGSIKYVHQDCLLQWLNHSNARQCEVCK
B8LQD2_______________CRICQEE-DEDRSMEIPCACSGSMKYAHRKCVQRWCNEKGDTTCEICQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
150		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain