SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36897

Length: 477 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene36897
TTTCTCAGGAGACACAGAATTGGGGCCCTCATTAGTTCTTCAAGCAAGTGAACTGGCCGATGCACGGGTGATTTACTGTGCAGCTCCTGCAATGGGACATAATCAGGAATCACATCCTGAATGCAATTCTCGAGTTCCAGAAATCTTGGATACTCTCCAAAAGATGGAACTCACTCCAGAGGCTATGGAGACAGCTGCCCAAGAAGGCTTGATACACATAGAGGGATCTGGTCCTACCTATGCCACTTCAACAACCTTTTCTGAATCCATGCTTGCAGTAGGGGCAGGAACTACCGTTACTGATTTGGTGGTTGCAGCATCAAAGATAACTGCAAACTCCACCCTTCTGGTTTTGCCTTGGTGAGGCCTCCAGGTCATCATGCTGTACCAAGAGGACCCATGGGGTTTTGTGTCTTTGGCAACATAGCTATAGCAGCTCGATATGCCCAACGTGTACATGGGCTACAACGTGTGTTA

Ace file of the UniGene sp_v1.1_unigene36897

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histone deacetylase (Fragment) n=1 Tax=Picea abies RepID=Q3ZDJ5_PICAB	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	histone deacetylase	-	-	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKL4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 236 aas, your sequence is shorter than subject: 159 - 648

Fln protein: FLRRHRIGALISSSSK*TGRCTGDLLCSSCNGT*SGITS*MQFSSSRNLGYSPKDGTHSRGYGDSCPRRLDTHRGIWSYLCHFNNLF*IHACSRGRNYRY*FGGCSIKDNCKLHPSGFALVRPPGHHAVPRGPMGFCVFGNIAIAARYAQRVHGLQRVL

Protein Length: 160

Fln nts: TTTCTCAGGAGACACAGAATTGGGGCCCTCATTAGTTCTTCAAGCAAGTGAACTGGCCGATGCACGGGTGATTTACTGTGCAGCTCCTGCAATGGGACATAATCAGGAATCACATCCTGAATGCAATTCTCGAGTTCCAGAAATCTTGGATACTCTCCAAAAGATGGAACTCACTCCAGAGGCTATGGAGACAGCTGCCCAAGAAGGCTTGATACACATAGAGGGATCTGGTCCTACCTATGCCACTTCAACAACCTTTTCTGAATCCATGCTTGCAGTAGGGGCAGGAACTACCGTTACTGATTTGGTGGTTGCAGCATCAAAGATAACTGCAAACTCCACCCTTCTGGTTTTGCCTTGGTGAGGCCTCCAGGTCATCATGCTGTACCAAGAGGACCCATGGGGTTTTGTGTCTTTGGCAACATAGCTATAGCAGCTCGATATGCCCAACGTGTACATGGGCTACAACGTGTGTTA

Fln Alignment:

sp_v1.1_unigene36897___SGFALVRPPGHHAVPRGPMGFCVFGNIAIAARYAQRVHGLQRVL
B8LKL4_______________NGFALVRPPGHHAGITDVMGFCLHNNAAIAARAAQAA-GAKKVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain