SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36888

Length: 557 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene36888
CGTCGTGACCTTGGCTGTCACTCAGGAAAATCACAGGAGTTTTCTGCTTTTTGCACATTGCTAGCCCAGAGCTTCAACAAGCATTGTATGTGCAGCACATGTTAGAACAAGCTGCTATGAAGAGACTCAAGGCATTAACATACCTTCGGCTGGAAATAAAAAATCCACTTTATGGAATCATGTTTACGCAAAAAATGATGGAACGCACAGATTTGAGGGAGGACCAGAGACAACTAGTGGAAACCAGCGCACTTTGCCAAAAACAGATCTTAAAAATTCTGGATGATATGGACCTAGAAAGCATCGAAGATGGTTATCTTGACTTGGATACGGTGGAATTTACCTTGGGAGCATTGCTTGATGCTGTCATAAGTCAGGGAATGATACAGAGTGAAGAAAAGGAATTGGAGATAGGTTATGACTTGCCAAGAGAAATAACAACAACAGGCCTCTATGGGGATCAGTCGAGGCTTCAGCAAATTTTGGCTAATTTCCTAGTAACTGTGATACAGTTCACACCAGCAGAAAAATGGGTTCGAATAAAAGTCAGTCCAACT

Ace file of the UniGene sp_v1.1_unigene36888 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phytochrome N (Fragment) n=1 Tax=Pinus sylvestris RepID=Q9FSD5_PINSY	-	-	97%
FL-Next	sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa).	-	-	67%
Blast2go	phytochrome	-	-	79%

Source	InterPros	Term	Type	Identity
Blast2go	ATPase-like, ATP-binding domain	IPR003594	-	79%
Blast2go	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	79%
Blast2go	Signal transduction histidine kinase, core	IPR005467	-	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q40762

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 85 aas, your sequence is shorter than subject: 185 - 1136

Fln protein: S*PWLSLRKITGVFCFLHIASPELQQALYVQHMLEQAAMKRLKALTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQLVETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKELEIGYDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPAEKWVRIKVSPT

Protein Length: 186

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAAAATCACAGGAGTTTTCTGCTTTTTGCACATTGCTAGCCCAGAGCTTCAACAAGCATTGTATGTGCAGCACATGTTAGAACAAGCTGCTATGAAGAGACTCAAGGCATTAACATACCTTCGGCTGGAAATAAAAAATCCACTTTATGGAATCATGTTTACGCAAAAAATGATGGAACGCACAGATTTGAGGGAGGACCAGAGACAACTAGTGGAAACCAGCGCACTTTGCCAAAAACAGATCTTAAAAATTCTGGATGATATGGACCTAGAAAGCATCGAAGATGGTTATCTTGACTTGGATACGGTGGAATTTACCTTGGGAGCATTGCTTGATGCTGTCATAAGTCAGGGAATGATACAGAGTGAAGAAAAGGAATTGGAGATAGGTTATGACTTGCCAAGAGAAATAACAACAACAGGCCTCTATGGGGATCAGTCGAGGCTTCAGCAAATTTTGGCTAATTTCCTAGTAACTGTGATACAGTTCACACCAGCAGAAAAATGGGTTCGAATAAAAGTCAGTCCAACT

Fln Alignment:

sp_v1.1_unigene36888___ITGVFCFLHIASPELQQALYVQHMLEQAAMKRLKALTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQLVETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKELEIGYDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPAEKWVRIKVSPT
Q40762_______________ITGVFCFLHVTSTELQQALQVQRMAEQAAMDRLKELAYIRQEIRNPLYGIIFTRKLMESTDLSEEQKQIVQTSALCQRQLVKVLDDADLESIEDGYLELDTIEFTLGTVLDAVVSQGMILSREKGLQLIRDSPEEIKTMCLYGDQLRLQQILSNFLINALRFSTSEGWVGNKVVPT

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
229	66		33		0.997452
258		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain