SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36883

Length: 513 nt

UniGene Fasta

>sp_v1.1_unigene36883
CGTCGTGACCTTGGCTGTCACTCATTTTCCTTACTCCCACCTTTTGTTCGTCTTCGCATGGTTTTGTATCTGATGTCAAAATTGTCTGCAACGCATGCTGATGTTGATTCCCATGCCCGACTACAACATCTGCACAAAAAGGAGTTGAGAATAAAGCGAACAATAAAAGTGCCAGCCATTAGCAGTAAATTGGCAGATATCCCTCCAGATGATTATTCGTGGAGGAAGTATGGACAAAAGCCAATCAAGGGCTCCCCACATCCAAGGGGCTATTACAAGTGCAGTAGCATGAGAGGTTGTCCTGCCCGGAAACATGTGGAGCGGTGTCCAGATGAACCTTCCATGCTTGTTGTGACTTATGAAGGAGAGCACAACCACTCAAGGATATTACCTGGTGGTCCAAATCTGAATGCCTGACCCTTAAATCTTGATGTATGCAACTGGGCCTAAAGGACATTTTTGGTACACATCCAGACGTGTGCATCACCGTTTCCATGGTCCTAACGAGACTGT

Ace file of the UniGene sp_v1.1_unigene36883

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable WRKY transcription factor 39 n=2 Tax=Arabidopsis RepID=WRK39_ARATH	-	-	2.0e-40	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	1.28919e-43	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular transcription, DNA-dependent	GO:0006350	Biological Process	1.28919e-43	94%
Blast2go	DNA binding	GO:0003677	Molecular Function	1.28919e-43	94%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	1.28919e-43	94%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA-binding WRKY	IPR003657	-	1.28919e-43	94%
Blast2go	Zn-cluster domain	IPR018872	-	1.28919e-43	94%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKE9

Fln msg: your sequence is shorter than subject: 139 - 335

Fln protein: RRDLGCHSFSLLPPFVRLRMVLYLMSKLSATHADVDSHARLQHLHKKELRIKRTIKVPAISSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCPDEPSMLVVTYEGEHNHSRILPGGPNLNA*

Protein Length: 140

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCCTTACTCCCACCTTTTGTTCGTCTTCGCATGGTTTTGTATCTGATGTCAAAATTGTCTGCAACGCATGCTGATGTTGATTCCCATGCCCGACTACAACATCTGCACAAAAAGGAGTTGAGAATAAAGCGAACAATAAAAGTGCCAGCCATTAGCAGTAAATTGGCAGATATCCCTCCAGATGATTATTCGTGGAGGAAGTATGGACAAAAGCCAATCAAGGGCTCCCCACATCCAAGGGGCTATTACAAGTGCAGTAGCATGAGAGGTTGTCCTGCCCGGAAACATGTGGAGCGGTGTCCAGATGAACCTTCCATGCTTGTTGTGACTTATGAAGGAGAGCACAACCACTCAAGGATATTACCTGGTGGTCCAAATCTGAATGCCTGA___CCCTTAAATCTTGATGTATGCAACTGGGCCTAAAGGACATTTTTGGTACACATCCAGACGTGTGCATCACCGTTTCCATGGTCCTAACGAGACTGT

Fln Alignment:

sp_v1.1_unigene36883___KKELRIKRTIKVPAISSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCPDEPSMLVVTYEGEHNHSRILPGGPNL
B8LKE9_______________RRKLRIKRTIKVPATSSKLADIPPDDHSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLDEPSMLIVTYEGEHNHSRILSGGPSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain