SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36854

Length: 520 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene36854
ATGGGAGGAGATGGGCACTTGGATCAAGGTGGCAAGACCAAAATTCGTTCGAGGGACTTGTATTGGGAGGTGTTGCTGGGGGTGTTAGTGCTTACATGACAACACCACTTGATGTCATCAAAACACGACTTCAAGTACAGGGATCAACTAAAAGGTACAATGGCTGGCTGGATGCTTTTCAAAAAATAAGGAGCACTGAAGGAACAAAAGGTTTTTTCAGGGGAAGTACTGCCAGAGTCATATGGTATGTCCCAGCTTCAGCTTGCACATTTATGGCTGTTGAGTTTCTGCGAGAGCATTTCAATGACAAGGTTCAGCATGATGCTCATGAAGTTGCAAGCATATCTATGGAGACAACTCTCCAATGACACAAGTTGTTTTTGAGCTAAATGGTGAATTTGTTCCCACCTATGTGGGTATTTTTGGACATCTTTTTGCACTAAGGATTCCAATGGTGGACACATCACACAAGATTGTGGATTGGAGGTGAAATTTAGCCAATCTAGTTGTGCTAGCCATC

Ace file of the UniGene sp_v1.1_unigene36854 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial carrier YMR166C n=4 Tax=Andropogoneae RepID=B6T2V1_MAIZE	-	-	2.0e-33	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	mitochondrial carrier protein	-	-	0.0	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	80%

Source	InterPros	Term	Type	Identity
Blast2go	Mitochondrial carrier protein	IPR002067	-	80%
Blast2go	Mitochondrial substrate/solute carrier	IPR018108	-	80%
Blast2go	Mitochondrial carrier domain	IPR023395	-	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNW0

Fln msg: your sequence is shorter than subject: 122 - 373

Fln protein: GRRWALGSRWQDQNSFEGLVLGGVAGGVSAYMTTPLDVIKTRLQVQGSTKRYNGWLDAFQKIRSTEGTKGFFRGSTARVIWYVPASACTFMAVEFLREHFNDKVQHDAHEVASISMETTLQ*

Protein Length: 123

Fln nts: ATGGGAGGAGATGGGCACTTGGATCAAGGTGGCAAGACCAAAATTCGTTCGAGGGACTTGTATTGGGAGGTGTTGCTGGGGGTGTTAGTGCTTACATGACAACACCACTTGATGTCATCAAAACACGACTTCAAGTACAGGGATCAACTAAAAGGTACAATGGCTGGCTGGATGCTTTTCAAAAAATAAGGAGCACTGAAGGAACAAAAGGTTTTTTCAGGGGAAGTACTGCCAGAGTCATATGGTATGTCCCAGCTTCAGCTTGCACATTTATGGCTGTTGAGTTTCTGCGAGAGCATTTCAATGACAAGGTTCAGCATGATGCTCATGAAGTTGCAAGCATATCTATGGAGACAACTCTCCAATGA___CACAAGTTGTTTTTGAGCTAAATGGTGAATTTGTTCCCACCTATGTGGGTATTTTTGGACATCTTTTTGCACTAAGGATTCCAATGGTGGACACATCACACAAGATTGTGGATTGGAGGTGAAATTTAGCCAATCTAGTTGTGCTAGCCATC

Fln Alignment:

sp_v1.1_unigene36854___RRWALGSRWQDQNSFEXXXXXXXXXXVSAYMTTPLDVIKTRLQVQGSTKRYNGWLDAFQKIRSTEGTKGFFRGSTARVIWYVPASACTFMAVEFLREHFNDKVQHDAHEVASISMET
B8LNW0_______________RRWALGSRWQDQNSFEGLVLGGVSGGVSAYMTTPLDVIKTRLQVQGSIKRYSGWLDAFQKIWSAEGTKGFFRGSTARVIWYVPASACTFMAVEFLREHFNDKMQHDAHEVASLSMET

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain