SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36844

Length: 453 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene36844
CGTCGTGACCTTGGCTGTCACTCAGCTTCTGCCAGATTTTAGGGCTGCTATGGTTGGGCCTCCAGACATTGTAGTTGCAACACCAGCTTGTATTGGGACATGTATTTCTAAAAATATTCTTCAGTCTTCATCTCTTGAGGAGTCACTTGCTACGTTGGTTTTAGATGAGGCAGATCTTCTTCTATCATATGGGTATGAAGAGGACTTGAAATCTCTGGTTCATTATATTCCACGTCGTTGTCAGTGCATCCTAATGTCTGCAACTTCAAGTGCAGATGTCGAGAAAATAAAAAAGCTTGTGCTGCATAGTCCTGTAATTCTGACACTAACTGAAGTGGAAGGAAACGAGTATGATGGAGTTGTACCCAACAGTGTGCAGCAATTTTGGATTTCATGTGATGTGCATGACAAACTACTTTACATTCTTGCCCTTCTCAAACTGGAATTGGTTAC

Ace file of the UniGene sp_v1.1_unigene36844

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dead box ATP-dependent RNA helicase, putative	-	-	4.00001e-40	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	protein	-	-	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	0.0	78%
Blast2go	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	0.0	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVB7

Fln msg: Distance to subject end: 330 aas, your sequence is shorter than subject: 134 - 465

Fln protein: MVGPPDIVVATPACIGTCISKNILQSSSLEESLATLVLDEADLLLSYGYEEDLKSLVHYIPRRCQCILMSATSSADVEKIKKLVLHSPVILTLTEVEGNEYDGVVPNSVQQFWISCDVHDKLLYILALLKLELV

Protein Length: 135

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTCTGCCAGATTTTAGGGCTGCT_-_ATGGTTGGGCCTCCAGACATTGTAGTTGCAACACCAGCTTGTATTGGGACATGTATTTCTAAAAATATTCTTCAGTCTTCATCTCTTGAGGAGTCACTTGCTACGTTGGTTTTAGATGAGGCAGATCTTCTTCTATCATATGGGTATGAAGAGGACTTGAAATCTCTGGTTCATTATATTCCACGTCGTTGTCAGTGCATCCTAATGTCTGCAACTTCAAGTGCAGATGTCGAGAAAATAAAAAAGCTTGTGCTGCATAGTCCTGTAATTCTGACACTAACTGAAGTGGAAGGAAACGAGTATGATGGAGTTGTACCCAACAGTGTGCAGCAATTTTGGATTTCATGTGATGTGCATGACAAACTACTTTACATTCTTGCCCTTCTCAAACTGGAATTGGTTAC

Fln Alignment:

sp_v1.1_unigene36844___MVGPPDIVVATPACIGTCISKNILQSSSLEESLATLVLDEADLLLSYGYEEDLKSLVHYIPRRCQCILMSATSSADVEKIKKLVLHSPVILTLTEVEGNEYDGVVPNSVQQFWISCDVHDK
A9NVB7_______________MVGPPDIVVATPACIATCISKNILQSSSLEESLSTLVLDEADLLLSYGYEQDLKSLVHHIPRRCQCILMSATSSADVEKIKKLVLHSPVILTLTEVEGNEYNGVVPNSVQQFWISCDVHDK

SNPs (tot: 3)

Position	A %	C %	T %	Probability
122	20	80		0.995494
215		80	20	0.995493
386		33	66	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain