SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36781

Length: 410 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene36781
ATGGGGGCAGCAGGGCCAGCTGATTGGAATGAAGCACTTAATATAATTGCTTATGGGTCACCTGAGCAGGCAGTTGAAGGTATGAAACTTGTTTGTCATGAATTAAGTCAAGCTGCTAATGATGCTGAAAGCACAGCAATGGATGATCTTGTGAAGGATTCAGATCGACTTGTGTTGTCTTTGTCAGCGAAGGTAGCTAAAACATTTAATTTAAGTCTTGCTGGTGCTTCTTCAAGGGCCTGTAAATATGTGTTGAATACCCTCATGCAGACATTCCAAATAAAGAAACTTGCTCATGGAGTAAAGGAAGGTACTCTTAACGTTCTTATTACTGAGCTTCTCCTCTGGTTGCTCGATGAAAGGGTTCCACTAATGGATGATGGTAGCCAACTACTGAAAGCTCTAAATGT

Ace file of the UniGene sp_v1.1_unigene36781 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MOR1/GEM1 n=3 Tax=Arabidopsis RepID=Q94FN2_ARATH	-	-	1.4013e-45	69%
FL-Next	sp=Protein MOR1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	77%
Blast2go	microtubule organization protein	-	-	1.4013e-45	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	microtubule cytoskeleton organization	GO:0000226	Biological Process	1.4013e-45	82%
Blast2go	cell plate formation involved in plant-type cell wall biogenesis	GO:0009920	Biological Process	1.4013e-45	82%
Blast2go	microtubule binding	GO:0008017	Molecular Function	1.4013e-45	82%
Blast2go	microtubule	GO:0005874	Cellular Component	1.4013e-45	82%
Blast2go	preprophase band	GO:0009574	Cellular Component	1.4013e-45	82%
Blast2go	spindle	GO:0005819	Cellular Component	1.4013e-45	82%
Blast2go	cortical microtubule cytoskeleton	GO:0030981	Cellular Component	1.4013e-45	82%
Blast2go	phragmoplast	GO:0009524	Cellular Component	1.4013e-45	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94FN2

Fln msg: Distance to subject end: 385 aas, your sequence is shorter than subject: 136 - 1978

Fln protein: MGAAGPADWNEALNIIAYGSPEQAVEGMKLVCHELSQAANDAESTAMDDLVKDSDRLVLSLSAKVAKTFNLSLAGASSRACKYVLNTLMQTFQIKKLAHGVKEGTLNVLITELLLWLLDERVPLMDDGSQLLKALN

Protein Length: 137

Fln nts: ATGGGGGCAGCAGGGCCAGCTGATTGGAATGAAGCACTTAATATAATTGCTTATGGGTCACCTGAGCAGGCAGTTGAAGGTATGAAACTTGTTTGTCATGAATTAAGTCAAGCTGCTAATGATGCTGAAAGCACAGCAATGGATGATCTTGTGAAGGATTCAGATCGACTTGTGTTGTCTTTGTCAGCGAAGGTAGCTAAAACATTTAATTTAAGTCTTGCTGGTGCTTCTTCAAGGGCCTGTAAATATGTGTTGAATACCCTCATGCAGACATTCCAAATAAAGAAACTTGCTCATGGAGTAAAGGAAGGTACTCTTAACGTTCTTATTACTGAGCTTCTCCTCTGGTTGCTCGATGAAAGGGTTCCACTAATGGATGATGGTAGCCAACTACTGAAAGCTCTAAATGT

Fln Alignment:

sp_v1.1_unigene36781___GAAGPADWNEALNIIAYGSPEQAVEGMKLVCHELSQAANDAESTAMDDLVKDSDRLVLSLSAKVAKTFNLSLAGASSRACKYVLNTLMQTFQIKKLAHGVKEGTXXXXXXXXXXXXLDERVPLMDDGSQLLKALN
Q94FN2_______________GVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQASNDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAHAVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain