SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36774

Length: 263 nt

UniGene Fasta

>sp_v1.1_unigene36774
AGTAGTTCATATGTATTCAGGAACAGTATATTTGATGCCGTAAAACATATGAACTACTCTTAGAAAGTGCAAATACTGTAAGTAAGCTTGCACACCGTCGTGACCTTGGTGTTATGGACTTTGCCTTGCTAATCTTCTATTGGATGGATACACAAATTCCACTCAGGATAATATAAAAAGGAGGTATCCTAAAACAAATGGATGGGACATAATGCTAGGGATGAATCTTTGGGGTTCGATTTACTCCTTCATCTATATGTTTC

Ace file of the UniGene sp_v1.1_unigene36774

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UTR3; UTR3 (UDP-GALACTOSE TRANSPORTER 3); pyrimidine nucleotide sugar transmembrane transporter	-	-	1.0e-17	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	udp-galactose transporter 3	-	-	5.77363e-25	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum unfolded protein response	GO:0030968	Biological Process	5.77363e-25	77%
Blast2go	nucleotide-sugar transport	GO:0015780	Biological Process	5.77363e-25	77%
Blast2go	UDP-glucose transmembrane transporter activity	GO:0005460	Molecular Function	5.77363e-25	77%
Blast2go	UDP-galactose transmembrane transporter activity	GO:0005459	Molecular Function	5.77363e-25	77%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	5.77363e-25	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRK5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 106 aas, your sequence is shorter than subject: 87 - 329

Fln protein: VVHMYSGTVYLMP*NI*TTLRKCKYCK*ACTPS*PWCYGLCLANLLLDGYTNSTQDNIKRRYPKTNGWDIMLGMNLWGSIYSFIYMF

Protein Length: 88

Fln nts: AGTAGTTCATATGTATTCAGGAACAGTATATTTGATGCCGTAAAACATATGAACTACTCTTAGAAAGTGCAAATACTGTAAGTAAGCTTGCACACCGTCGTGACCTTGGTGTTATGGACTTTGCCTTGCTAATCTTCTATTGGATGGATACACAAATTCCACTCAGGATAATATAAAAAGGAGGTATCCTAAAACAAATGGATGGGACATAATGCTAGGGATGAATCTTTGGGGTTCGATTTACTCCTTCATCTATATGTTTC

Fln Alignment:

sp_v1.1_unigene36774___PS*PWCYGLCLANLLLDGYTNSTQDNIKRRYPKTNGWDIMLGMNLWGSIYSFIYMF
A9NRK5_______________PNAPWGYGLCLANLLLDGYTNSTQDNIKRRYPKTNGWDIMLGMNLWGSIYSFFYMF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain