SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36771

Length: 285 nt

UniGene Fasta

>sp_v1.1_unigene36771
GGGCTACATTGATGATTGATCAAATAGATAAAATGGCACCAAGGTGGAAGAGAGCGGACATTCTGATTTTCAACACAGGGCATTGGTGGGCACATGGAAAGACATCAAAGGGGAAAGACTACTTTCAAGAAGGAGATGAAGTGCATGAAAAATTAGATGTGCTTACAGCTTTCAGGCGGGCAATGACAACATGGGGGAAATGGATTGATGAAAATGTGAATCCTGCAAGAACCCGTGTTTTCTATCGTGGCTACTCAGCCGCCCATTTCAGTTAAAATGCAGACT

Ace file of the UniGene sp_v1.1_unigene36771

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF231 domain containing protein	-	-	3.0e-25	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	protein	-	-	1.79957e-34	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF231, plant	IPR004253	-	1.79957e-34	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A976

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 107 aas, your sequence is shorter than subject: 91 - 462

Fln protein: ATLMIDQIDKMAPRWKRADILIFNTGHWWAHGKTSKGKDYFQEGDEVHEKLDVLTAFRRAMTTWGKWIDENVNPARTRVFYRGYSAAHFS*

Protein Length: 92

Fln nts: GGGCTACATTGATGATTGATCAAATAGATAAAATGGCACCAAGGTGGAAGAGAGCGGACATTCTGATTTTCAACACAGGGCATTGGTGGGCACATGGAAAGACATCAAAGGGGAAAGACTACTTTCAAGAAGGAGATGAAGTGCATGAAAAATTAGATGTGCTTACAGCTTTCAGGCGGGCAATGACAACATGGGGGAAATGGATTGATGAAAATGTGAATCCTGCAAGAACCCGTGTTTTCTATCGTGGCTACTCAGCCGCCCATTTCAGTTAAAATGCAGACT

Fln Alignment:

sp_v1.1_unigene36771___TLMIDQIDKMAPRWKRADILIFNTGHWWAHGKTSKGKDYFQEGDEVHEKLDVLTAFRRAMTTWGKWIDENVNPARTRVFYRGYSAAHF
D5A976_______________TLQLDSIDEQAKRWKHADILVFNSGHWWTHEEPYNGVDYFEEKGRVIPHMEELVAFEKALRTWARWIDANIDPKHTQVFFRGYSPVHF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain